Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00478 ATGGCAGCTAGAGTAAGGGTTTCTTTACTGGTCCTCATGAGCCTTGTCACTTACATGTTTAGCACCGCGGAATCTTCTATAACCCCAGCAGAGTTCATTAAGTCTTCGTGCAGGGCTACTCGCTACCCTATTTTGTGTGTTAGATGTCTCATGAGGTATGCGAGCGTGATTGGCCTAAGTGAGCGACAACTAGCCATGACTGCTCTATCAGTGACCATATCAAGGACGCGATCGAGTGCATCATTTGTGAAGAAGATATCAAAAGCAAGAGGCATCAAACCAAGGGAGTACAGTGCCATACAAGACTGCATAGAAAATATGGGTGATAGTTTGGACAGTCTTAGCCAATCGGTTAGGGAGTTAGTCAGTATTGGTCATGCTGTTGGAGAGGATTTCGTGTGGCACATGAGCAACGTGCAAACTTGGGTCAGTGCTGCCCTTACTGATGATAACACTTGTCTTGATGGCTTTGCTGGTCCTTCCATGAATGGAAATGTCAAGGCAGCCATCAAGAACAGAGTTGTCAATCTTACTCAAGTTACCAGCAACGCACTCGCTTTGGTCAATCGCTTCGCCTCGATTCATCAAACTGCTGAAACTCCTTAA 606 0.4587 MAARVRVSLLVLMSLVTYMFSTAESSITPAEFIKSSCRATRYPILCVRCLMRYASVIGLSERQLAMTALSVTISRTRSSASFVKKISKARGIKPREYSAIQDCIENMGDSLDSLSQSVRELVSIGHAVGEDFVWHMSNVQTWVSAALTDDNTCLDGFAGPSMNGNVKAAIKNRVVNLTQVTSNALALVNRFASIHQTAETP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00478 201 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 192 IPR035513 -
Trre9g00478 201 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 191 IPR035513 -
Trre9g00478 201 FunFam Pectin methylesterase inhibitor 1 28 191 - -
Trre9g00478 201 SMART PMEI_2 28 187 IPR006501 GO:0004857
Trre9g00478 201 NCBIfam pectinesterase inhibitor domain 8 189 IPR006501 GO:0004857
Trre9g00478 201 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 187 - -
Trre9g00478 201 CDD PMEI-like_3 35 193 - -
Trre9g00478 201 Pfam Plant invertase/pectin methylesterase inhibitor 32 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00478 Trre-Chr9 3454557 3455162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00478 33 188 Carbohydrate Esterase AT3G14310 31.210 3.95e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00478 - - mtr:11427094 323.939