Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00470 ATGGGGCGTATGCACAGTAGTGGTAAGGGTATATCATCCTCCGCTTTGCCATACAAAAGAACTTCTCCTAGCTGGCTCAAGATCTCTTCCCAAGATGTTGATGAGAATATTTGCAAGTTTGCAAAGAAGGGTTTGACTCCTTCTCAGATCGGTGTTATTCTTCGTGATTCTCACGGTATTGCTCAGGTTAAGAGCGTTACCGGCAGCAAAATCCTCCGTATCCTCAAAGCTCATGGACTTGCACCTGAGATTCCTGAGGATCTGTACCATTTGATTAAGAAGGCTGTTTCAATCCGTAAGCATCTTGAGAGGAACAGAAAGGACAAAGACTCAAAGTTCAGACTCATCCTTGTTGAGAGCAGAATCCACCGTCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACAACTGCCAGCACTTTGGTTGCTTAG 456 0.4452 MGRMHSSGKGISSSALPYKRTSPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00470 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Trre9g00470 151 Gene3D - 83 151 - -
Trre9g00470 151 Gene3D - 35 82 - -
Trre9g00470 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Trre9g00470 151 FunFam 40S ribosomal protein S13 35 82 - -
Trre9g00470 151 FunFam 40S ribosomal protein S13 83 151 - -
Trre9g00470 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre9g00470 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00470 Trre-Chr9 3380728 3382577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00470 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.702 3.85e-104 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00470 K02953 - mnt:21387865 295.434