Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00468 ATGAATTACTTCCATCTTCTTCTTTCTTTGTTTCTATTGATTGCATTTTCAACTCCAGAAAAAGCTTGTGGAAATGCAGAGCTAAGGGCTTTGATGGATTTGAAAACTTCTCTTGATCCAGAGGGAAAAATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGAAGGAGTTGCTTGTAATGAACATTGGAAAGTAGCTAATATATCTTTGCAAGGAAAGGGACTTTCTGGTTGTTTATCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGGTTATATTTGCATTATAACAATCTTTCTGGTGAGATACCATCACAAATTTCAAATCTTACTGAGCTTGTTGATCTTTATCTTGATGTTAATAGTCTTTCTGGAACAATTCCTTCTGAGATTGGAAACATGGCTAGTCTACAAGTACTTCAGTTGGGAGATAATCAATTGGTGGGTAATATACCTACACAGATGGGTTCCTTGAAGCAGCTTACAACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTATTAGCTTAGGGAACTTGGAGAATCTAAGCAGGCTAAATTTGAGTTTCAACAATTTCAGTGGTCCTTTTCCAGCAACACTAGCCAATGTTGCACATTTGGAAGTTCTGGATATTCAAAACAATTCTCTATCAGGAACTGTTCCTTCTGCATTGAAGAGACTTGGGGAAGGATTCCAAGGGGCAAACAATCAAGGTTTATGTGGAGTAGATATTTTTACTTTGAGAGCTTGCGACAAGAATTCAGATTTTAATGTCAGCGAAATTGATGCCTCGGATCAAGACCACCTCAAAAATGGTAATCCCGCAACGCCTCGCCCGGAGGCTGCAGATTTCCAAATGCACTGTAACAAGACTCACTGCTCAAAATCAAGGTTTCCTGTAAGTATCATCACAGCAGCAAGTGTTGTAATCCTCACTCTCACATTCATAGGTGTTGGTTTGTTTGCATTCGTGAAATACCGCCGTCGAAAGCAGAAGATTACATCGAGCTTTTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGAGTTATACAGAAAAAGTCCATCTACCCTCGTTAATCTTGACTATTATAACGGATGTTATCCAATGCCTGATGATCAAAATGCTGGGGGATTATACAGTGAATATCTAAACCAATTTAGGTTTAATGTAGATGAAGTCGAATCTGCAACGCAATATCTTTCAGAAGCAAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAATTCTCAGAGACGGTTCTCTTGTCGCTATTAGAAGCATTAACATGACATTCTGCAAAACCGAGGAAGCCGAATTTGTAAAGGGATTGAGCTTATTAACCTCACTTAGACATGAAAACATTGTTAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATTTACGACTTTGCAACGATGGGCTACCTATCTCAATACCTTGACATAGAGGATATAAGTGGCCATTTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAAGGCATTGCAAAGGGTATAGGATATCTGCACAGCGATGAAGCAAGCAAACCTTCAATAGTACACCAAAATATATCAGTCGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCTGGACTTCCGAAGCTTCTCGCAGACGATGTTGTTTTTTCAGCTCTAAAAGTAAGTGCCGCAATGGGATACCTAGCTCCTGAATACATTACTACAGGACGCTTTACCGAGAAGAGTGACATATATGCATTTGGAGTTATTGTACTTCAAGTTTTATCTGGGAAGACAGCAATCGGCGGTTCAATACGGACAGCATTCGAGTCTCTACGATTTGATGATTGCATAGACACAAATCTTAAGGGAAGATATTCTAGTTCTGAAGCAACGATGCTTACAAAGCTTGCAGTGCAGTGTGTCCATGAGAGTCCCGACGAAAGACCAAGCATGGTGGATGTGATTCAGGAGCTAAGGGTGTTTCCGGCTAATTCATAA 2046 0.3959 MNYFHLLLSLFLLIAFSTPEKACGNAELRALMDLKTSLDPEGKILTSWISDGNPCSGSFEGVACNEHWKVANISLQGKGLSGCLSPAVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNSLSGTIPSEIGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPISLGNLENLSRLNLSFNNFSGPFPATLANVAHLEVLDIQNNSLSGTVPSALKRLGEGFQGANNQGLCGVDIFTLRACDKNSDFNVSEIDASDQDHLKNGNPATPRPEAADFQMHCNKTHCSKSRFPVSIITAASVVILTLTFIGVGLFAFVKYRRRKQKITSSFSEGKLSPQQPKELYRKSPSTLVNLDYYNGCYPMPDDQNAGGLYSEYLNQFRFNVDEVESATQYLSEANLLCKSKFSAMYKGILRDGSLVAIRSINMTFCKTEEAEFVKGLSLLTSLRHENIVKLRGFCCSSSRGECYLIYDFATMGYLSQYLDIEDISGHLLDWSKRVSIIKGIAKGIGYLHSDEASKPSIVHQNISVENVLLDKEFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLKGRYSSSEATMLTKLAVQCVHESPDERPSMVDVIQELRVFPANS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00468 681 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Trre9g00468 681 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Trre9g00468 681 Gene3D Phosphorylase Kinase; domain 1 382 487 - -
Trre9g00468 681 SUPERFAMILY L domain-like 23 233 - -
Trre9g00468 681 ProSiteProfiles Protein kinase domain profile. 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00468 681 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Trre9g00468 681 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 310 674 - -
Trre9g00468 681 SUPERFAMILY Protein kinase-like (PK-like) 385 675 IPR011009 -
Trre9g00468 681 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Trre9g00468 681 Pfam Protein tyrosine and serine/threonine kinase 414 674 IPR001245 GO:0004672|GO:0006468
Trre9g00468 681 Gene3D Transferase(Phosphotransferase) domain 1 489 677 - -
Trre9g00468 681 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
Trre9g00468 681 Gene3D Ribonuclease Inhibitor 22 272 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00468 Trre-Chr9 3368160 3371388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00468 6 522 Miscellaneous Gene Families AT4G22730 56.449 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre9g00468 PK_Tyr_Ser-Thr 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00468 - - gmx:100777169 1010.75