Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00454 ATGGATCCAATAACAGCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACATCAACACCAACAGCAGCAGCAGCAGCAACAACAGCATCATCATCAATTCCACACTTTACAACAGCAACCAGATCAAGATGAACAAAGTGGAAGCAGTAGCGGTGGCGGCCTTAACCTCACGAACCGCGAAGAAAACAGCCACAAGTTCAACACCGATTTTAGTAGCCCGAAATTAGAATCCGGAGGAGGAGGTTCTGGTGGTGACACAGATTCAATGACTAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATCATCATCACACGAGACAGCGCGAACGCGCTGAAAACTCACGTGATGGAAGTTGCAGACGGTTGTGATGTGGTTGAAAGTGTTAACAACTTCGCTAGACGCCGTCAAAGAGGCGTATGCATCATGAGTGGGACCGGAACAGTCACAAACGTTACGCTAAGGCAGCCTGCATCGCCTGGAGCGGTAGTTACTCTTCATGGAAGATTTGAGATTCTTTCGCTAGCTGGGTCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGATTGACGATATATTTAGCGGGCGGACAAGGGCAGGTAGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATCATGTCTGCTTCTTTTAGTAACGCTGCTTATGAAAGACTACCTTTGGAAGAAGATGATGCTACTTCTTTGCAACAACTTCAAGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGTTCAGCAGACACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCACCTCCTAATCATAATCCTAATGCTAATCTTCTAAATTCTGTTCAGATGCCTTCTGATAATTTCTGGCCAACTGGTCGTTCTCCTTATTGA 969 0.4696 MDPITAHGHSLPPPFHTARDLHLHHQHQHQQQQQQQQQHHHQFHTLQQQPDQDEQSGSSSGGGLNLTNREENSHKFNTDFSSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEEDDATSLQQLQGGGGGSPSGGGGVQQTQLLGDSTAPLFQAMPPPNHNPNANLLNSVQMPSDNFWPTGRSPY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00454 322 CDD DUF296 129 196 IPR005175 -
Trre9g00454 322 Gene3D - 128 263 - -
Trre9g00454 322 MobiDBLite consensus disorder prediction 28 71 - -
Trre9g00454 322 MobiDBLite consensus disorder prediction 295 322 - -
Trre9g00454 322 FunFam AT-hook motif nuclear-localized protein 128 255 - -
Trre9g00454 322 PIRSF ESCAROLA 13 321 IPR014476 GO:0003680
Trre9g00454 322 MobiDBLite consensus disorder prediction 258 285 - -
Trre9g00454 322 MobiDBLite consensus disorder prediction 258 322 - -
Trre9g00454 322 ProSiteProfiles PPC domain profile profile. 125 264 IPR005175 -
Trre9g00454 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Trre9g00454 322 MobiDBLite consensus disorder prediction 22 118 - -
Trre9g00454 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 258 - -
Trre9g00454 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 316 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00454 Trre-Chr9 3243345 3244313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00454 1 322 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.471 1.42e-82 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00454 - - tpra:123911246 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00454 9 3243345 3244313 Trre9g00454 9 3243345 3244313 ECH