Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00447 ATGAGAAGAACACTGTGTCAAATTCATCTTTCTCATGCTCTATTCATTCCCATTCTCTGTTTGCTTTGGTCTATTGCAACTGTTTCACAAGCAACTGAGAAAGAGATTTTACTTCAATTCAAGGGTAACATCACAGAAGATCCATACAATACATTGAGTTCATGGCTTTCAAGTGGAGACCCTTGTCAAAATTACAAAGGTATTTTCTGTAACATAGAAGGATTTGTAGAAAGAATAGTGCTTTGGAACACTAGCTTGGGTGGAGTTTTGTCACCAGCACTCTCGGGGTTGAAGAGTTTGAGGACATTGACATTGTTTGGGAACCGATTTTCGGGTAATATCCCAGATGATTATGCTGATCTTCACTCATTGTGGAAGATCAATGTGAGCTCCAATGCGTTATCCGGTTTGATCCCGGAATTTATTGGTGATTTGCCTAACATTCGGTTTCTAGATTTATCGAAGAATGGTTTCATTGGGGAGATACCTTCAGCTTTGTTTAGGTACTGCTACAAAACCAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTTCAATTCCTGTATCATTGGTTAATTGTCCCAACCTTGAAGGCTTTGATTTTTCTTTCAATAATCTTAATGGTGTTGTCCCTTCTAGAATCTGTGATATTCCTATGTTATCATATGTATCTCTGAGAAGCAATGCCTTATCAGGGAGTGTGAAAGAGTACATTTCTGCATGCCATAGTTTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATATGGCACCATTTAGCATCCTTGGAATGCAAAATCTTACCTACTTCAATATATCCTATAATGGGTTTGAAGGGCAAATTCCTGATATCACTTCATGTAGTGAGAGATTAGAGATCTTTGATGCTTCGGGGAATAATTTGGACGGGGTGATTCCATCCAGCATAACTAGATGCAAGAACCTAAAACTCTTGTCATTGGAGTTGAATAGGCTGAAGGGGAGTATCCCGGCTGATATTCAGGAATTGCGAGGGCTATTGGTTATCAAACTGGGCAATAACTCGATAGGCGGAATGATTCCTGAGGGCTTTGGCAACATTGAGCTTCTTGAATTGCTGGATTTGAGCAACCTAAACCTCACTGGCGAAATTCCGGTTGACATAACAAATTGCAAGTTTCTTCTTGAGCTGGATGTTTCTGGTAATAACCTAGACGGCGAGATTCCTCCGGCTATTTACAAAATGACAAATCTTGAAGCCCTTGACCTACATTATAACCAGCTTAAGGGAAGCATCCCATCAATCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTATCACATAATTCACTTTCTGGTCCAATCCCTCCTTCCCTTGGAGATTTAAATAACTTGACAAATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATATTTCAACCATACAGCATTTTGGTGCACCAGCATTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTGGAAACCACTTGCTCAACAAAAGGAACTAGATCATCGTCTTCACCTCCGGGGAAGACTAAACTTCTCAGCGTCTCTGCAATTATTGCCATTGTTGCTGCAGCTCTCATTCTTACTGGGGTTTGTTTGGTGACCATTATGAGCATTAGAGCCCGGCGTAGAAAAAAAGACAATGATCAGATTATGATTATTGACGAGAGTACACCTCTAGGATCAAGATCAACAGAATCAAATGTTATAATTGGAAAGTTGGTTCTCTTCAGCAAAAGTTTACCATCGAAATATGAAGATTGGGAGGCAGGCACTAAAGCATTGCTTGATAAAGAGTCTTTGATAGGAGGTGGGTCGATTGGTACAGTCTACAAAACCGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTCGAAAACGAAATCGGGCGACTAGGTAACATTCAACACCATAATTTGGTTGCCTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAATGGGAATCTTTATGATAATCTACATGGGCATGGTTATCCTGGAACAAGCACAAGTAGAGGCAATAGGGAATTAGATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCACGACTGTCGACCTCCAATCCTTCACCTCAACCTTAAATCCTCTAATATTCTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTTTGGATTAGGAAAGTTGTTACCGATTTTGGATAATTACGGTTTGACCAAGTTCCACAATGCTGTTGGTTATGTTGCACCAGAGTTAGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTATAGTTTCGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAGTGAGGTTGTGGTTTTGTGTGAATATGTGAGAAGCCTGTTGGAGACTGGCTCAGCTTCACATTGCTTTGATAGAAATTTACTGGGATTTACTGAGAGTGAATTGATTCAGGTTATGAGATTGGGGATAATATGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCATTAA 2682 0.4016 MRRTLCQIHLSHALFIPILCLLWSIATVSQATEKEILLQFKGNITEDPYNTLSSWLSSGDPCQNYKGIFCNIEGFVERIVLWNTSLGGVLSPALSGLKSLRTLTLFGNRFSGNIPDDYADLHSLWKINVSSNALSGLIPEFIGDLPNIRFLDLSKNGFIGEIPSALFRYCYKTKFVSLSHNNLVGSIPVSLVNCPNLEGFDFSFNNLNGVVPSRICDIPMLSYVSLRSNALSGSVKEYISACHSLMHLDFGSNRFTDMAPFSILGMQNLTYFNISYNGFEGQIPDITSCSERLEIFDASGNNLDGVIPSSITRCKNLKLLSLELNRLKGSIPADIQELRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLSNLNLTGEIPVDITNCKFLLELDVSGNNLDGEIPPAIYKMTNLEALDLHYNQLKGSIPSILGNLSRIQYLDLSHNSLSGPIPPSLGDLNNLTNFDLSFNNLSGVIPDISTIQHFGAPAFSNNPFLCGAPLETTCSTKGTRSSSSPPGKTKLLSVSAIIAIVAAALILTGVCLVTIMSIRARRRKKDNDQIMIIDESTPLGSRSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIRNQEEFENEIGRLGNIQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGHGYPGTSTSRGNRELDWSRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDFGLGKLLPILDNYGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTSEVVVLCEYVRSLLETGSASHCFDRNLLGFTESELIQVMRLGIICTSEDPLRRPSMAEIVQVLESIRNGLESH 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00447 893 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 170 507 - -
Trre9g00447 893 Gene3D Transferase(Phosphotransferase) domain 1 682 892 - -
Trre9g00447 893 Gene3D Ribonuclease Inhibitor 170 507 IPR032675 -
Trre9g00447 893 PANTHER OS05G0588300 PROTEIN 214 337 - -
Trre9g00447 893 Pfam Protein kinase domain 607 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00447 893 SMART LRR_typ_2 434 458 IPR003591 -
Trre9g00447 893 SMART LRR_typ_2 145 169 IPR003591 -
Trre9g00447 893 SMART LRR_typ_2 410 433 IPR003591 -
Trre9g00447 893 SMART LRR_typ_2 338 361 IPR003591 -
Trre9g00447 893 SMART LRR_typ_2 121 144 IPR003591 -
Trre9g00447 893 ProSiteProfiles Protein kinase domain profile. 605 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00447 893 ProSiteProfiles Leucine-rich repeat profile. 412 434 IPR001611 GO:0005515
Trre9g00447 893 CDD STKc_IRAK 611 886 - -
Trre9g00447 893 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Trre9g00447 893 FunFam Putative LRR receptor-like serine/threonine-protein kinase 582 681 - -
Trre9g00447 893 Gene3D Phosphorylase Kinase; domain 1 572 681 - -
Trre9g00447 893 SUPERFAMILY L domain-like 70 198 - -
Trre9g00447 893 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Trre9g00447 893 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 30 169 - -
Trre9g00447 893 SUPERFAMILY L domain-like 168 500 - -
Trre9g00447 893 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 682 892 - -
Trre9g00447 893 Gene3D Ribonuclease Inhibitor 29 169 IPR032675 -
Trre9g00447 893 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00447 Trre-Chr9 3191509 3194289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00447 14 892 Receptor kinase-like Gene Family AT1G62950 64.713 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre9g00447 Pkinase 8.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00447 - - mtr:11437247 1578.92