Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00426 ATGGAATTGAGCTTCCATCATCCCAGGGCTATGGCGGGTCGTGCTGTGTCAGGTTTGGGTTCTCTTCTAAATACTGAAGAATCAAGCAACTTTGACTGTTTTGCTGCTGTTGACATGGAACAGGGATCTTCGTCAAATCCTACCTCAAAAAAGAGAAAAGGTATCTACAGTGGAAACAATGAAGACGGTGTTCTTCCTCCTACGAACCCAGTTTCCCCCCCCAATCTTGATGAAGCGCGGAATCCTGCTATGGTCTATTTGATAGCAGAAGCAATTATACTTCAAATCAACCCCGGAGAGGATATTATTGCAAGGATAAGATCCTTTTATGAGCAAGCACCGGATGATTTACGCATCCGGTCTGCCTTTGGTGTTATATCAAGTGCTGTTCTTGGTAACGATGTTTCTGTACCGATGACAGTCAAGAGTATGTGTGAAATACTATCATTAAGTGGATCCTTTGGAGCAAACGAAAATGGTATTGTGACTGTTTCTTTAGCGAATAATGAAGGTCGTGTAATCGGTGGTCGTGTAGTCGGTGAAATGATGGCTGCAACTCTTGTAACCGTAGAGTTATGCCGATTGCTTCGAAAAGGTAATGAAGATCCCTGCGGATATTACTTTAATCCCACTGAAGAAGACTTGATTAAGCACTATTTGCTCAAAAAGATATTTGGTGAAAGAACAGACATAGAACTGAAGGTTATCGACCTTCTTAAAGTTGAGCCCTCAGACATACCGCAGTTATGCAAAGTTTCAGGTAAAGAGACTTCCGAGTGGTATTTTTACACTCAGAAAGACCCAAATTATCTGTCTGGGACCACCGGCACAAATAGAGCTACCGCGAAAGGAAACTGGAGAACTTCGGGAAGCGACAAGGAAATTTACACAGATAAGGGAGCTCTTATTGGTATGAGAAAAACGCTTATTTTCTACCAAGGAAAGTCATCAGGCAGGAAAATTACCGAATGGTCTATTCACGAGTACCGTGCTGAAAACATTAAAAATGAAGGATCATGGTTAATTTGCAAGCTCTTTACAAGCCAAAGAAAGACAAAAGCTGACCGTCCACGTTTACCCCCAGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCAAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCAGATGCTTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCTACTCTATCAGTCGCAAGGCCCAGGGTATCATGTTTTTAACCAGCTTTCATCCCATCAACCACTCCATCAGGATCAATTAAATCAAGATCAGTTAAATCAAATGATAAATTCAATGGTCGATCCGGAATGGGATGCAAAACCATAG 2097 0.4473 MELSFHHPRAMAGRAVSGLGSLLNTEESSNFDCFAAVDMEQGSSSNPTSKKRKGIYSGNNEDGVLPPTNPVSPPNLDEARNPAMVYLIAEAIILQINPGEDIIARIRSFYEQAPDDLRIRSAFGVISSAVLGNDVSVPMTVKSMCEILSLSGSFGANENGIVTVSLANNEGRVIGGRVVGEMMAATLVTVELCRLLRKGNEDPCGYYFNPTEEDLIKHYLLKKIFGERTDIELKVIDLLKVEPSDIPQLCKVSGKETSEWYFYTQKDPNYLSGTTGTNRATAKGNWRTSGSDKEIYTDKGALIGMRKTLIFYQGKSSGRKITEWSIHEYRAENIKNEGSWLICKLFTSQRKTKADRPRLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQLLYQSQGPGYHVFNQLSSHQPLHQDQLNQDQLNQMINSMVDPEWDAKP 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00426 698 ProSiteProfiles PPC domain profile profile. 86 219 IPR005175 -
Trre9g00426 698 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 192 IPR005175 -
Trre9g00426 698 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 196 - -
Trre9g00426 698 CDD DUF296 92 192 IPR005175 -
Trre9g00426 698 Gene3D - 90 202 - -
Trre9g00426 698 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 203 443 - -
Trre9g00426 698 Pfam No apical meristem (NAM) protein 203 330 IPR003441 GO:0003677|GO:0006355
Trre9g00426 698 SUPERFAMILY NAC domain 199 347 IPR036093 GO:0003677|GO:0006355
Trre9g00426 698 Gene3D NAC domain 211 353 IPR036093 GO:0003677|GO:0006355
Trre9g00426 698 ProSiteProfiles NAC domain profile. 202 348 IPR003441 GO:0003677|GO:0006355
Trre9g00426 698 MobiDBLite consensus disorder prediction 40 70 - -
Trre9g00426 698 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00426 Trre-Chr9 3095638 3099487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00426 203 349 NAC Transcription Factor Family AT1G62700 44.737 1.00e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g00426 NAM 6.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00426 - - mnt:21384338 153.295