Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00425 ATGAATGGAATTGAGCTTCCATCATCCCAGGGCTATGGCGGGTCGTGCTGTGTCAGTGTGACTGAAAGGCTTATCTTGCATTCATTGCAAGAATCAAGCAACTTTGACTGTTTTGCTGCTGTTGACATGGAACAGGGATCTTCGTCAAATCCTACCTCAAAAAAGAGAAAAGGTATCTACAGTGGAAACAATGAAGACGGTGTTCTTCCTCCTACGAACCCAGTTTCCCCCCCCAATCTTGATGAAGCGCGGAATCCTGCTATGGTCTATTTGATAGCAGAAGCAATTATACTTCAAATCAACCCCGGAGAGGATATTATTGCAAGGATAAGATCCTTTTATGAGCAAGCACCGGATGATTTACGCATCCGGTCTGCCTTTGGTGTTATATCAAGTGCTGTTCTTGGTAACGATGTTTCTGTACCGATGACAGTCAAGAGTATGTGTGAAATACTATCATTAAGTGGATCCTTTGGAGCAAACGAAAATGGTATTGTGACTGTTTCTTTAGCGAATAATGAAGGTCGTGTAATCGGTGGTCGTGTAGTCGGTGAAATGATGGCTGCAACTCTTGTAACCGTAGAGTTATGCCGATTGCTTCGAAAAGGTAATGAAGATCCCTGCGGATATTACTTTAATCCCACTGAAGAAGACTTGATTAAGCACTATTTGCTCAAAAAGATATTTGGTGAAAGAACAGACATAGAACTGAAGGTTATCGACCTTCTTAAAGTTGAGCCCTCAGACATACCGCAGTTATGCAAAGTTTCAGGTAAAGAGACTTCCGAGTGGTATTTTTACACTCAGAAAGACCCAAATTATCTGTCTGGGACCACCGGCACAAATAGAGCTACCGCGAAAGGAAACTGGAGAACTTCGGGAAGCGACAAGGAAATTTACACAGATAAGGGAGCTCTTATTGGTATGAGAAAAACGCTTATTTTCTACCAAGGAAAGTCATCAGGCAGGAAAATTACCGAATGGTCTATTCACGAGTACCGTGCTGAAAACATTAAAAATGAAGGATCATGGTTAATTTGCAAGCTCTTTACAAGCCAAAGAAAGACAAAAGCTGACCGTCCACGTTTACCCCCAGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCAAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCGGATGCCTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCCTCAAGGTCAGGAATGTTCAGTTTTTAATCAGATTCCATCCCAGCAACCACTCTATCACTTTCCAGGCCCATCAGATGCTTTGTTACCCCCGGGAGCACTCAATATACGAGGGGATCAGCCAGTCCAAGAGGTTCCTGCTTCTAATCAGCCAGTCCAACAGGTTTCTCTTTTTAATCAGCCATCCCATCAGCTACTCTATCAGTCGCAAGGCCCAGGGTATCATGTTTTTAACCAGCTTTCATCCCATCAACCACTCCATCAGGATCAATTAAATCAAGATCAGTTAAATCAAATGATAAATTCAATGGTCGATCCGGAATGGGATGCAAAACCATAG 2109 0.4471 MNGIELPSSQGYGGSCCVSVTERLILHSLQESSNFDCFAAVDMEQGSSSNPTSKKRKGIYSGNNEDGVLPPTNPVSPPNLDEARNPAMVYLIAEAIILQINPGEDIIARIRSFYEQAPDDLRIRSAFGVISSAVLGNDVSVPMTVKSMCEILSLSGSFGANENGIVTVSLANNEGRVIGGRVVGEMMAATLVTVELCRLLRKGNEDPCGYYFNPTEEDLIKHYLLKKIFGERTDIELKVIDLLKVEPSDIPQLCKVSGKETSEWYFYTQKDPNYLSGTTGTNRATAKGNWRTSGSDKEIYTDKGALIGMRKTLIFYQGKSSGRKITEWSIHEYRAENIKNEGSWLICKLFTSQRKTKADRPRLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQPQGQECSVFNQIPSQQPLYHFPGPSDALLPPGALNIRGDQPVQEVPASNQPVQQVSLFNQPSHQLLYQSQGPGYHVFNQLSSHQPLHQDQLNQDQLNQMINSMVDPEWDAKP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00425 702 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 196 IPR005175 -
Trre9g00425 702 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 200 - -
Trre9g00425 702 CDD DUF296 96 196 IPR005175 -
Trre9g00425 702 SUPERFAMILY NAC domain 203 351 IPR036093 GO:0003677|GO:0006355
Trre9g00425 702 Gene3D - 94 206 - -
Trre9g00425 702 ProSiteProfiles NAC domain profile. 206 352 IPR003441 GO:0003677|GO:0006355
Trre9g00425 702 Pfam No apical meristem (NAM) protein 207 334 IPR003441 GO:0003677|GO:0006355
Trre9g00425 702 ProSiteProfiles PPC domain profile profile. 90 223 IPR005175 -
Trre9g00425 702 MobiDBLite consensus disorder prediction 44 76 - -
Trre9g00425 702 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 207 447 - -
Trre9g00425 702 MobiDBLite consensus disorder prediction 44 58 - -
Trre9g00425 702 Gene3D NAC domain 215 357 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00425 Trre-Chr9 3095634 3099487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00425 207 353 NAC Transcription Factor Family AT1G62700 44.737 1.14e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g00425 NAM 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00425 - - mnt:21384338 153.295