Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00422 ATGCAAGAACCAAGTTTGGGAATGATGCACGGTGGTGGTGGTGGTTATGGTGGAGATGGCAGCGGCGGTGGTGATAACCGACAGTTGAAGGCTGAGATAGCAACACATCCTTTGTATGAACAGCTTCTGTCTGCACATGTAGCATGTCTTCGTGTTGCAACTCCTATAGATCAGTTACCTTTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCTCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAACTTCAGCAACATGTCAGAGTTCATGCCGTTGAAGCTGTCATGGCTTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCAGATGATGAAGACGAACAAATGCAGATGGATTATTGTTTAGATAATAATCAATCTGGTAATGGTGGTGATCATGACATGATGGGTCTTGGTCCATTACTTCCTACTGAATCTGAAAGATCACTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTACGCGAAGAAATATTAAGGAAAAGAAGAGCCGGTAAATTACCAGGCGACACAACTTCTGTCTTAAAGAATTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGATGACAAAGCAAAACTTGTCGAGGAAACGGGGCTGCAGCTGAAACAAATCAATAACTGGTTCATAAACCAAAGGAAACGAAACTGGCATAGTAATTCTCAATCTGTTACCTCATTGAAGTCGAAACGCAAGAGGTAG 885 0.4203 MQEPSLGMMHGGGGGYGGDGSGGGDNRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQMQMDYCLDNNQSGNGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00422 294 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Trre9g00422 294 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Trre9g00422 294 FunFam homeobox protein knotted-1-like 3 isoform X1 218 279 - -
Trre9g00422 294 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g00422 294 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Trre9g00422 294 Pfam KNOX2 domain 85 136 IPR005541 GO:0003677|GO:0005634
Trre9g00422 294 SUPERFAMILY Homeodomain-like 219 284 IPR009057 -
Trre9g00422 294 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Trre9g00422 294 CDD homeodomain 220 281 IPR001356 GO:0003677
Trre9g00422 294 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
Trre9g00422 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 281 - -
Trre9g00422 294 Gene3D - 216 290 - -
Trre9g00422 294 SMART HOX_1 219 284 IPR001356 GO:0003677
Trre9g00422 294 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00422 Trre-Chr9 3060956 3068122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00422 1 293 Homeobox Transcription Factor Family AT1G62990 78.498 4.20e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre9g00422 KNOX2 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00422 - - tpra:123907403 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00422 9 3060956 3068122 Trre9g00422 9 3060956 3068122 ECH