Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00420 ATGGCTCATTTGGTTTATGGTGAAACTCCATCTTTTGGAAACTCACACCATGGACAAGGTCAACAACTTGTTCCATTTCCAACCACTTCAAGTTCTTTAAGGATTCTACTCTTACATGGTAACTTACAAATTTGCATCCATGAAGCTAAAAATCTTCCTAACATGGACACTTTTCATAAGAAAATGGGAGAAATGTTTTCAATCTTGCCTAAAAAACTTGGTGGTAAAATTGAAGGCAAGATGTCTCATAATATAACAAGTGATCCATATGTAACTGTTTCTGTAGCTGGTGCTGTTATTGCAAGAACTTTTGTCATCAGAAACAATGAAAACCCTATTTGGAATCAGCATTTTAATGTTCCTGTTGCACATTTTGCATCAGAGATTCATTTAGTTGTAAAAGACAATGATATTGTTGGTTCACAGGTTATTGGTGCAGTTGGAATTCCAGTTGAAAAGTTATGTAATGGTACAAAAATTGAAGGTTTTTTCCCTATTCTTAATACTAATGGAAAAACCTTTAAGACTGACACAGTTTTGAGCTTATCAATTCAGTATACTCCTGTTGATAAGGTAACCCTTTATAGAAATGGTGTCGGTGATGATAATGAAGGTGTTCCTGCTACTTATTTTCCACTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCCACAAGGTTGTCTTCCTAGTTTGAAGATTGATGGTGGTCATGATCATGAACATGGAGATTGTTGGCATGATATCTTTGATGCAATAAGTCAGGCACGTCGATTAGTGTATATTGTTGGTTGGTCTGTTTATTACAATGTTAGTCTCATTAGGGATACTAGAGATGGAAGAGATTATACTTTAGGTGAGGTTCTCAAAGCTAAATCACAAGAAGGTGTTAGAGTGCTTCTACTTGTGTGGGATGATCCTACTTCTAATAGCATGCTTGGACATAAAACAGTTGGACTTATGAACACTTATGACGAGGAAACTCGCCATTTTTTCAAGCACTCTTCGGTTAGAGTGCTTCTTTGCCCTAGAGCTGGTGGAAAAGGACATAGCTGGGTCAAACAGCAGGAAGCTGGAACAATCTATACTCATCATCAGAAGACAGTCATTGTGGATGCTGATGCTGGTCAACATAAAAGAAAGATTGTAGCTTTCATCGGCGGTCTTGATTTATGTCTGGGAAGATATGATACCCCGGCACATTCTCTCTTTAGGACTTTGCAGACAACACACAAAGATGACTTTCATAATCCTAACTTTGAGGGTTCAGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCAAAGTTGATGGTCCTGCTGCATATGATATCCTCACCAATTTCGAGGAGCGTTGGTTAAGGGCGTTAAAAATGACTAGACTTCAAAAGATGAAAACTTCACATGATGATTCATTATTGAAAATTGATAGAATCTCTGACATTGTTGGCATTGATGAAGTTTCTAGCCTAGATGAACATAACCAAGAGACTTGGCATGTCCAGATCTTCCGTTCGATTGATTCCAATTCTGTGAAAGGATTTCCGAAAGAACCGAAAGACGCTATACAAAGGAATTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAAGCAATCAGAGCAGCACAGAAGTTCATTTATATTGAGAATCAATATTTTCTTGGCTCATCATATAATTGGGATTCGTACAAAGACCTCGGTGCAAACAACTTAATTCCAATGGAAATTGCGCTAAAAATAGCCGACAAAATCAAACAGAAAGAGAGATTCTCTGTGTATATTGTCATTCCTATGTGGCCTGAAGGAGTTCCTTCAAGTACAGCTACGCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACAATTTACAAAGCTCTAGTAGAGGCTGGACTTGAAAATGAGTATGAACCACAAGACTACTTGAACTTCTTTTGCCTTGGCAATCGCGAGCTCGCCGATAATGAAAACATTTCGAAAACTGTAAAACCTACCGGACAAAACACTCCTCAGGTACTCACTCAAAAGAACAGAAGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTATTGGGATCTGCCAACATAAATCAGAGATCCATGGAAGGCACTAGAGACACTGAGATTGCAATGGGAGCATATCAGCCTAATCATACTTGGACAACCAAGAAATCTAAACCTCATGGACAGGTGCATGGTTATAGAATGTCACTGTGGAGTGAACACATAGGAGGTGTGGAAGAATGTTTCAAGCAACCAGAGAGCATTGAATGTGTGAGAAGGATAAGGTCATTGAGTGAGTATAACTGGAGACAATACATTGCTGATGAAGTAACTGAAATGAAAAGTCATTTACTGAAATACCCTCTTGAGGTTGACTCAAAGGGCAAGGTCAAGCCTCTTTTTGGCTGTGAAACATTCCCTGATGTTGGTGGAAACATAAAGGGCACCTTTACTGTACTTCAAGAAAATCTCACCATCTGA 2556 0.3822 MAHLVYGETPSFGNSHHGQGQQLVPFPTTSSSLRILLLHGNLQICIHEAKNLPNMDTFHKKMGEMFSILPKKLGGKIEGKMSHNITSDPYVTVSVAGAVIARTFVIRNNENPIWNQHFNVPVAHFASEIHLVVKDNDIVGSQVIGAVGIPVEKLCNGTKIEGFFPILNTNGKTFKTDTVLSLSIQYTPVDKVTLYRNGVGDDNEGVPATYFPLRKGGKVTLYQDAHVPQGCLPSLKIDGGHDHEHGDCWHDIFDAISQARRLVYIVGWSVYYNVSLIRDTRDGRDYTLGEVLKAKSQEGVRVLLLVWDDPTSNSMLGHKTVGLMNTYDEETRHFFKHSSVRVLLCPRAGGKGHSWVKQQEAGTIYTHHQKTVIVDADAGQHKRKIVAFIGGLDLCLGRYDTPAHSLFRTLQTTHKDDFHNPNFEGSVTGCPRQPWHDLHSKVDGPAAYDILTNFEERWLRALKMTRLQKMKTSHDDSLLKIDRISDIVGIDEVSSLDEHNQETWHVQIFRSIDSNSVKGFPKEPKDAIQRNLVCGKNVMIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIADKIKQKERFSVYIVIPMWPEGVPSSTATQRILFWQFKTMQMMYETIYKALVEAGLENEYEPQDYLNFFCLGNRELADNENISKTVKPTGQNTPQVLTQKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPNHTWTTKKSKPHGQVHGYRMSLWSEHIGGVEECFKQPESIECVRRIRSLSEYNWRQYIADEVTEMKSHLLKYPLEVDSKGKVKPLFGCETFPDVGGNIKGTFTVLQENLTI 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00420 851 SMART pld_4 363 398 IPR001736 GO:0003824
Trre9g00420 851 SMART pld_4 697 724 IPR001736 GO:0003824
Trre9g00420 851 FunFam Phospholipase D 511 743 - -
Trre9g00420 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Trre9g00420 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 697 724 IPR001736 GO:0003824
Trre9g00420 851 ProSiteProfiles C2 domain profile. 23 164 IPR000008 -
Trre9g00420 851 SUPERFAMILY Phospholipase D/nuclease 532 782 - -
Trre9g00420 851 Gene3D C2 domain 35 179 IPR035892 -
Trre9g00420 851 Gene3D Endonuclease Chain A 238 483 - -
Trre9g00420 851 CDD C2_plant_PLD 36 187 - -
Trre9g00420 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Trre9g00420 851 SUPERFAMILY Phospholipase D/nuclease 202 464 - -
Trre9g00420 851 Pfam Phospholipase D Active site motif 698 724 IPR001736 GO:0003824
Trre9g00420 851 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Trre9g00420 851 PANTHER PHOSPHOLIPASE D 32 840 IPR015679 -
Trre9g00420 851 SMART C2_3c 41 163 IPR000008 -
Trre9g00420 851 Gene3D Endonuclease Chain A 495 751 - -
Trre9g00420 851 FunFam Phospholipase D delta 239 477 - -
Trre9g00420 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Trre9g00420 851 Pfam C2 domain 40 166 IPR000008 -
Trre9g00420 851 PIRSF PLD_plant 27 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00420 Trre-Chr9 3049329 3053631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00420 15 851 Phospholipase D Gene Family (Wang group) AT2G42010 67.514 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00420 K01115 - gmx:100786241 1514.98