Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00413 ATGGATTTTTTCATGTCATTATCTGGTGAATACTCAGACATTTCTTCTGAAACAAGTTCTTCTCCAAACTGTATAAGTTCTTCAGAAGTGATTTTGGCATCTGCCAAACCAAAGAAACAAGCAGGGAGAAGAGTGTTTAAAGAAACAAGACATCCTGTATACCGAGGAGTACGAAGAAGAAACAATAACAAATGGGTTTGTGAGATGAGAATTCCAAACAAAAACAACAAAAGTAATAAGTCAAGAATTTGGCTTGGAACATATCCAACACCAGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCCGATTCGGCGTGGAGGTTGAGGTTACCGGACTCGAATGACGCGGTGGAGATAAGGAGAGCGGCAATGGAAGCTGCTAAGTTGTTTGCGGTTGAAGATGGAGTGGTTGAAGAGGATGATATGGAATATTCTAAAAAGAATGTGTTGGAAGTACAAATTCCGGCTGTGTCGTCGGAATTTGAAGAGTTGCATGATTTGCTTTTGAGTATTGCTAATGAGCCTTTACGTTCACCTCCTCCTTCCATGAATGATTACTGGGGTGATATGGAGATATTTGACACACAAATTTCATTGTGGAACTTCTCAATTTGA 654 0.3991 MDFFMSLSGEYSDISSETSSSPNCISSSEVILASAKPKKQAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPDSNDAVEIRRAAMEAAKLFAVEDGVVEEDDMEYSKKNVLEVQIPAVSSEFEELHDLLLSIANEPLRSPPPSMNDYWGDMEIFDTQISLWNFSI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00413 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 214 IPR045277 GO:0003700
Trre9g00413 217 CDD AP2 54 117 IPR001471 GO:0003700|GO:0006355
Trre9g00413 217 SMART rav1_2 53 121 IPR001471 GO:0003700|GO:0006355
Trre9g00413 217 Gene3D AP2/ERF domain 53 116 IPR036955 GO:0003700|GO:0006355
Trre9g00413 217 Pfam AP2 domain 52 107 IPR001471 GO:0003700|GO:0006355
Trre9g00413 217 SUPERFAMILY DNA-binding domain 53 117 IPR016177 GO:0003677
Trre9g00413 217 ProSiteProfiles AP2/ERF domain profile. 53 115 IPR001471 GO:0003700|GO:0006355
Trre9g00413 217 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Trre9g00413 217 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00413 Trre-Chr9 2996557 2997210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00413 25 215 AP2-EREBP Transcription Factor Family AT1G12610 45.283 3.89e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00413 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00413 - K09286 psat:127120702 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00413 9 2996557 2997210 Trre9g00413 9 2996557 2997210 ECH
Trre15g03093 15 28150676 28151173 Trre9g00413 9 2996557 2997210 PCT