Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00412 ATGAATTTTTTCATGTCATCATTTAGTGAATACTCAGACACTTCTTCTTCTGAAACAAGTTCTTCTTCAAACCGTATAAGTTCTTCACAAGTGATTTTGGCATCTTCTAAACCAAAGAAGAAAGCAGGGAGAAGAGTTTTTAAAGAAACAAGACATCCTGTGTACCGAGGAGTACGAAGAAGGAACAATAACAAATGGGTTTGTGAGATGAGAGTTCCTAATTGTAATAACAAAAACATTATTAAGTCAAGGATTTGGCTTGGATCATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAAATCAGCTTGTCTTAATTTCGCTGATTCGGCGTGGAGGTTGAGGTTACCGGAGTCGAATGATGCTGCGGAGATAAGAAGAGCGGCAATGGAAGCTGCTAAGTTGTTTGCGGTTGAAGATAGAGTGGTTGTGGAGGATGATATGGAAGATTCCAAAAAGAATGTACTAGAAGTACAAATTCCGACGACACCGTCGGAATTTAAAGACTTTGATGATTTGCTTTTGAGTATTGCTAATGAGCCTTTACGTTCACTTCCTACTTCCCCAACAAATTATTATGGTGGTACTTGTAACTGGGGTGACATGGACATGCTTGATACTCAAGTTTCACTATGGAACTTCTCAATTTGA 678 0.3923 MNFFMSSFSEYSDTSSSETSSSSNRISSSQVILASSKPKKKAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNCNNKNIIKSRIWLGSYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAAEIRRAAMEAAKLFAVEDRVVVEDDMEDSKKNVLEVQIPTTPSEFKDFDDLLLSIANEPLRSLPTSPTNYYGGTCNWGDMDMLDTQVSLWNFSI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00412 225 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre9g00412 225 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Trre9g00412 225 ProSiteProfiles AP2/ERF domain profile. 54 117 IPR001471 GO:0003700|GO:0006355
Trre9g00412 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 222 IPR045277 GO:0003700
Trre9g00412 225 Pfam AP2 domain 53 109 IPR001471 GO:0003700|GO:0006355
Trre9g00412 225 SMART rav1_2 54 123 IPR001471 GO:0003700|GO:0006355
Trre9g00412 225 MobiDBLite consensus disorder prediction 1 45 - -
Trre9g00412 225 SUPERFAMILY DNA-binding domain 54 119 IPR016177 GO:0003677
Trre9g00412 225 Gene3D AP2/ERF domain 54 118 IPR036955 GO:0003700|GO:0006355
Trre9g00412 225 MobiDBLite consensus disorder prediction 1 35 - -
Trre9g00412 225 CDD AP2 55 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00412 Trre-Chr9 2993752 2994429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00412 26 223 AP2-EREBP Transcription Factor Family AT1G12610 45.662 1.94e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00412 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00412 - - psat:127120702 240.736