Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00405 ATGGGCGGCGAGGAGAGAGAAAATTGTGCTTATCAAATTCTAGTGGATCGGCTTCAGATTTTGGAGGAGAAACAAGCCTTGCTGACGGAGCAGTTCAGTGAGTTGTTGCAAGAGAAGAAGCTCACGGTCAAAGCTTCAACCGCTGATTTTCTTTCAGGATTCTTCTTCTCTGGAAGTCCTTATGCTAAAGTTTTGAAATGCATGGGGATTTCCGTTTATGTCCATAGTGTTTCCACCGGCGAGATCATATACTGGAATAATGCAGCAGAAACTCTATATGGATGGAAGGAGCATGAAGTAATTGGACAAAGAATAGCCGATTTCCTAGTTGCTGAGGAATATTATTTATCTCTGCGAAAAATTCTACAACAGTTGATCACAGGAGTGCCATGGTCTGGACAGTTTCCTTTCAAGAAGAGATCTGGTGAAATATTCATGGCAATGGTAACAAAAACTCCTCTTTACGAGGATGGTGTGCTTGTTGGTATTATCAGTGTTTCTAGTGATGCAGCTGTAGTTAACTCTATACCCCTAGGAGGGGGTAAGGGTAAGTGGAGTAAGGATTTTGTCAATGGAAGAACTTGCCAATCTCGCGCGAATGACAAACCTGGAATTCAAAGGTTAAAAAGGGTTCAATGGCCTCCACGCCCGCAAATTGCATCATCTGTTTCCAATCTGGCATCAAAGTTTCGTCCACTCCAGCGTACAGATGATTCCGTTTCCAAGAACACTTCAACAGATTCAGATGATGAAAAACAAGGGAAGCCTGGGATTTATGAAACTGAATCTCGTTCCAGAAGTCACCATAAAGAAAACACAACTGTCCCAGAGGCCAGCACGAAGGATGAGTCTACAACTGAACTTAGTCAATCTTCTAAAATTGCAGCTAAAGTCCTTTCTAAGTTTCGAATTGGGGGAAGTGCTAAATGTAGGAAGGATGCTGGAAGTATTAAAGATAATTGCGCAACTGATGATAATTCAGGAAGTAATACAGTGAATAATGAAAATGATTTATCTGGAAGTTCAGTTGCATTAACCTCGCACCAGGATATTTCTAATGGACAAGATAAAGAAGAATGTTTCCAAAAACGTAATTCTGCACATAGAACTTCTTGCGTTTTCAAAGATAGTTCTGCTATACCTTTCTCAGAGAACAGTTGTGAATGTTCTGGTTCTCCCGTTTCCCAAGATCCTTTGTTAAGATTACACTGCTCTTTCGATCCAAAGAAATTGGAGCCTAAAGCTACGAATTTGGCAATAGAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGTCATTGGCGAGCTTGAAGGAGAGTACAGGTGGCCATTTAAGCAAAGGGAAAAGTGAATCAAACTCTGTTGTAGAGTGTGAAATCCAATGGAAAGACCTTCAATTAAGAAAAGAGATCGGGCAAGGTTCTTTTGCTATTGTTTATCATGGAATTTGGAATGCATCGGATGTTGCCGTCAAGGTTTACTTTGCAAATGGATACACAGAGGCGAATTTACAAGACTACAAAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATATATTCTCAGGAAAAGCATGCCATAGTGACAGAATTATTACCTCGGGGAAGCCTTTTCAGAACACTTCACAAGAACAATCAAACATTTGACATTAGACGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTAAAGTCTTCTAACCTGCTTGTTGATAAAAACTGGAATGTAAAGGTTGGAGACTTTGGCCTTTCGAAGTTGAAGGATGCAACCTTAATGACTACAAAATCCGGGAGAGGCACACCTCAATGGATGGCCCCTGAAGTCCTCCGCAGTGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTATGGTGTCGTCCTTTGGGAAATAATGACTCAATCTATTCCATGGAAAGATTTGAATTCCTTACAGGTTGTTGGAATAGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATGTCGCATCAATCATAAATGACTGCTGGCAAAGTGATCCACAACAACGTCCTTCGTTTGAAGAGCTGATACAGAGAATGATGTTGGCTATCAGCAGAGTATCAACTTTGTCATTAAATGGAATTGCAGAATCCTGA 2205 0.4091 MGGEERENCAYQILVDRLQILEEKQALLTEQFSELLQEKKLTVKASTADFLSGFFFSGSPYAKVLKCMGISVYVHSVSTGEIIYWNNAAETLYGWKEHEVIGQRIADFLVAEEYYLSLRKILQQLITGVPWSGQFPFKKRSGEIFMAMVTKTPLYEDGVLVGIISVSSDAAVVNSIPLGGGKGKWSKDFVNGRTCQSRANDKPGIQRLKRVQWPPRPQIASSVSNLASKFRPLQRTDDSVSKNTSTDSDDEKQGKPGIYETESRSRSHHKENTTVPEASTKDESTTELSQSSKIAAKVLSKFRIGGSAKCRKDAGSIKDNCATDDNSGSNTVNNENDLSGSSVALTSHQDISNGQDKEECFQKRNSAHRTSCVFKDSSAIPFSENSCECSGSPVSQDPLLRLHCSFDPKKLEPKATNLAIEDEVQKQQEGLSLASLKESTGGHLSKGKSESNSVVECEIQWKDLQLRKEIGQGSFAIVYHGIWNASDVAVKVYFANGYTEANLQDYKKEVDIMKRLRHPNVLLFMGAIYSQEKHAIVTELLPRGSLFRTLHKNNQTFDIRRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKDATLMTTKSGRGTPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKDLNSLQVVGIVGFMDRRLDLPEGLDPHVASIINDCWQSDPQQRPSFEELIQRMMLAISRVSTLSLNGIAES 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00405 734 SMART serkin_6 464 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00405 734 Pfam PAS domain 77 169 IPR000014 -
Trre9g00405 734 PRINTS Tyrosine kinase catalytic domain signature 538 551 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 PRINTS Tyrosine kinase catalytic domain signature 577 595 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 PRINTS Tyrosine kinase catalytic domain signature 643 665 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 PRINTS Tyrosine kinase catalytic domain signature 624 634 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 PRINTS Tyrosine kinase catalytic domain signature 687 709 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 CDD PAS 68 169 IPR000014 -
Trre9g00405 734 MobiDBLite consensus disorder prediction 320 340 - -
Trre9g00405 734 FunFam Serine/threonine-protein kinase isoform 1 455 542 - -
Trre9g00405 734 NCBIfam PAS domain S-box protein 78 169 IPR000014 -
Trre9g00405 734 Gene3D Transferase(Phosphotransferase) domain 1 543 724 - -
Trre9g00405 734 Gene3D PAS domain 74 172 - -
Trre9g00405 734 SMART pas_2 59 127 IPR000014 -
Trre9g00405 734 MobiDBLite consensus disorder prediction 217 241 - -
Trre9g00405 734 MobiDBLite consensus disorder prediction 194 291 - -
Trre9g00405 734 FunFam PAS domain-containing protein tyrosine kinase family protein 542 730 - -
Trre9g00405 734 ProSitePatterns Protein kinases ATP-binding region signature. 470 491 IPR017441 GO:0005524
Trre9g00405 734 Gene3D Phosphorylase Kinase; domain 1 457 541 - -
Trre9g00405 734 ProSiteProfiles Protein kinase domain profile. 464 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00405 734 SUPERFAMILY Protein kinase-like (PK-like) 453 721 IPR011009 -
Trre9g00405 734 ProSiteProfiles PAS repeat profile. 80 129 IPR000014 -
Trre9g00405 734 MobiDBLite consensus disorder prediction 242 277 - -
Trre9g00405 734 Pfam Protein tyrosine and serine/threonine kinase 464 715 IPR001245 GO:0004672|GO:0006468
Trre9g00405 734 Coils Coil 11 38 - -
Trre9g00405 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Trre9g00405 734 SUPERFAMILY PYP-like sensor domain (PAS domain) 71 169 IPR035965 -
Trre9g00405 734 CDD STKc_MAP3K-like 470 716 - -
Trre9g00405 734 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 260 718 - -
Trre9g00405 734 MobiDBLite consensus disorder prediction 311 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00405 Trre-Chr9 2924093 2930707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00405 1 717 MAP Kinase Kinase Kinase AT4G23050 44.087 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre9g00405 PK_Tyr_Ser-Thr 4.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00405 - - gmx:100813707 1019.22