Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00404 ATGTCGACTACACGCTCACCGAACCATTCCACAGAAGACATCGTCGATTCAACTCCGTTTCTACCAAATTCCACCGGCTCCTCCGACGAAATCAACTCCGGTCGTCGAATTGTTCGTCGACAGAGACTTCTCCAAGCGGCGAGATTCCTCCGACAAGCAAGCGGACGGAGAATGATGCGCGAACCTTCGGTTGTTGTTCGAGAAGCAGCGGCGGAGCAATTGGAAGAAAGACAAAGCGATTGGGCGTATTCGAAACCTGTTGTGATTCTTGATATCGTTTGGAACTTCGCTTTCGTTGTTGTGTCTGCAACTGCTTTGTTTCTGAGTTGGAATGAATCGCCGGAGATGCCTTTAAGGCTTTGGATTGCTGGATACGTTCTGCAATGTGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGAAGACGGAGAAGGTATCAACGTTCTTCGTCTTCGAATGCAGTAGCAGGTTCTGATAGAGTTGGTGGTGCAAGCAGTGGGAATTTGAGTTCTGGTTCGAGAGATGGTTCTCGTTCTGTTTCTGTTTCTGTTTCTGGTTCCAGTTATGTTTCATTGGCTCAATTTGGTGAAGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTATCCGAAGATTCTCCTCAGCTTTACTGGTTATGTATAATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTTGCCTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCGCTTCTTTATGCTGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGACGAGTTGAAAGTAATGAGAAACAAACTGATAGTATTCAAGAACCTGCTGGAGGTATAATGACTGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGATGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCATTGTGCCTGTGTGGATAAATGGTTGTATATTAATGCAACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGTAATTTCGGTCCAGAGGAAGTGTAG 1194 0.4355 MSTTRSPNHSTEDIVDSTPFLPNSTGSSDEINSGRRIVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVSATALFLSWNESPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRYQRSSSSNAVAGSDRVGGASSGNLSSGSRDGSRSVSVSVSGSSYVSLAQFGEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSEDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKQTDSIQEPAGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNFGPEEV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00404 397 MobiDBLite consensus disorder prediction 151 178 - -
Trre9g00404 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 393 IPR013083 -
Trre9g00404 397 SMART ring_2 342 382 IPR001841 -
Trre9g00404 397 PANTHER TARGET OF ERK KINASE MPK-1 54 388 - -
Trre9g00404 397 MobiDBLite consensus disorder prediction 1 32 - -
Trre9g00404 397 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Trre9g00404 397 FunFam E3 ubiquitin-protein ligase At1g12760 328 393 - -
Trre9g00404 397 Pfam Ring finger domain 341 383 IPR001841 -
Trre9g00404 397 SUPERFAMILY RING/U-box 332 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00404 Trre-Chr9 2917776 2921723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00404 17 390 C3H Transcription Factor Family AT1G68070 47.354 4.46e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00404 - - gmx:100790497 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03080 15 27864610 27865191 Trre9g00404 9 2917776 2921723 PCT