Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00403 ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCTATTCCGACGCCGTTTTTGACGAAAACGTATCAGCTCGTTGATGATCCATCTGTTGATGATTTGATTTCATGGAACGAAGATGGAACGAGTTTCATAGTTTGGAAACCTGCTGAATTCGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAACTTCTCCAGTTTTGTTCGTCAACTCAACACCTATGGATTTCGGAAAGTTGTACCTGACCGTTGGGAATTTGCGAATGACGGTTTCCGACGAGGCGAGAAAAATCTACTCCGGGATATACAGCGGCGGAAAATAGCGCCGGCGGCAGGAACAGCCATGGCGACGGCTGTGGCTGCGGCTAATACTGTAACGGTAGCTATGGCGGCACCTGTAAGAATGGTGTCTCCAACAACTTCTGGTGACGAGCAGGTAGTTTCTTCGAATTCATCTCCGATTGTGGCGCACAATAGTACTACAGTGCACCGTAGCACCAGTTGCACCACTGCACCTGAGTTATTTGAAGAGAATGAAAGGCTTAAGAAAGAAAATTTGCAACTGAGTAATGAGTTGAGTCAATTAAGAGGTCTTTGTAATAATATACTCTCTATGATGAGTAATTATGCTTCTGGTTTTAGTGGACAGTTAGAATCTTCGACAAGTGCCGCAACGGCGCGAGCTGTGCTTGTAAAGGAAGCTAAAGCCTTGGAGCTTTTGCCTACACGGAATGTTTTGTTATCTGCGGAACCTGTGGCGGTTAATGCAGGTGGCGTGGCCGGTGGCACGCCGTGCGAAATGATGAATTTCGTGGAACATGAGGTTCGGGCACCTAAGGTTCCCAAGTTGTTTGGGGTTTCTATTGGACTTAAACGATATAGGACGGAGAGTGAGGCCGAACCGGAAAGAGAGGTACAGGTAACACAATCCTCGCAAGAACCTGATCAAGGATCGGATGTGAAATCTGAATCACTAGATGGCGATGACTCGGATGATCAAGAGCATCGTTGGAATTTGATGAAATAG 1053 0.4672 MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKIAPAAGTAMATAVAAANTVTVAMAAPVRMVSPTTSGDEQVVSSNSSPIVAHNSTTVHRSTSCTTAPELFEENERLKKENLQLSNELSQLRGLCNNILSMMSNYASGFSGQLESSTSAATARAVLVKEAKALELLPTRNVLLSAEPVAVNAGGVAGGTPCEMMNFVEHEVRAPKVPKLFGVSIGLKRYRTESEAEPEREVQVTQSSQEPDQGSDVKSESLDGDDSDDQEHRWNLMK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00403 350 MobiDBLite consensus disorder prediction 328 350 - -
Trre9g00403 350 MobiDBLite consensus disorder prediction 313 327 - -
Trre9g00403 350 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 Gene3D - 17 115 IPR036388 -
Trre9g00403 350 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Trre9g00403 350 Coils Coil 180 207 - -
Trre9g00403 350 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g00403 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 321 IPR027725 -
Trre9g00403 350 MobiDBLite consensus disorder prediction 304 350 - -
Trre9g00403 350 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00403 Trre-Chr9 2913929 2915091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00403 16 346 HSF AT4G11660 49.284 2.09e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre9g00403 HSF_DNA-bind 5.2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00403 K09419 - gmx:100791020 462.996