Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00402 ATGTCTCATCCAGATTTGCTACATTTATGTCTTTCTTCTCCCAATTGTAACAGTGATACTTGTTTTCTTGAATCAACTCATCTTACTGGGAAAGTAAAATCCCAAATTAGCTCGAAAAACGGATTCTGGACAGATGAAGAGGATAATCTTTTGATTGAGACATTCAAGAAGCACGGCGGAAGCAACTGGAAAAGTATAGCTGCATACTTCCCTGGGCGAACCGACATTGAATGCTTTCATCGCTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGAGATCATGGACAAAGGAGGAGGATGAGATCTTAACTGAACTGGTAAGAAAGTATGGTTTCAAGAGATGGTCTTTTATTGCAAAATTCATACCAGGTCGTGTTGGGAAGCAATGTCGCGAAAGTAAATGGGCAGAAATTGCAAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACAGCTCAATGAAGAAGAAGACGTCTACATCACCTATTAGGCGTGACATGAATGTTTCCACTTCCAGTTTCTGCAGTTCTCTAATAAAGCCAGCTGATGATCCAAGTTTAATTGGAATGGCTTCTCCCAAGCAAAGTCACTGGCTGAAGCACAATGCTGATAACCATTCAACAAGAATGATTATTCGAAATGCTTCCTCAGAGGAATTTTGCTTTGAAAAAAACGGTTTTGCCGTGGCAACTCCTAGGGCAGGACAAGGTTTAAGAAGACCAGTCAATTTAACAAATGAGATGGAAACAGTTATGGGTTGCAAAGACCATGCCAACCCTACCTTCTCAGTTAAACATATGGACTCATCTTCGGATAATTCGTTGGATAGGTTCACTACAAATATGGATTGTTTCCCTTCTTCCAGTACTGTTACTTATGAGGCCTATAATAAGTCTCCCAAATGGCAAAAGGTTTCTTTGTTTGACTCAATGTTCTATGCTGGTAATGAATCCGACAGTCCCCATTTGAGCTACTCAAAATTGGCTAATCATGAGAAGAAAGTTCAAGTTGGAAGAGAAAGCAATGACAAAAGCGACGCAAGCCCGGAATCTGTACTAAGAAGCTTAGCAATGACCTATGAGAACACTCCTTCTATTATAAGGAAAAGAAATTCTAGGAAGGCATGCAATGCTGCCAATTATGGCAAGTCTCGAACACCTTCGACAATGGATGTCTCAACTCCTGAAGCAGGATGTGTATTTGGCTTTGATAATTTAAAACTCAACCAAGGATTTGTTCCATCATTCCTTCCTAGAAATGCAATGGAATGA 1284 0.4011 MSHPDLLHLCLSSPNCNSDTCFLESTHLTGKVKSQISSKNGFWTDEEDNLLIETFKKHGGSNWKSIAAYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDEILTELVRKYGFKRWSFIAKFIPGRVGKQCRESKWAEIARVLPGRSDNAIKNHWNSSMKKKTSTSPIRRDMNVSTSSFCSSLIKPADDPSLIGMASPKQSHWLKHNADNHSTRMIIRNASSEEFCFEKNGFAVATPRAGQGLRRPVNLTNEMETVMGCKDHANPTFSVKHMDSSSDNSLDRFTTNMDCFPSSSTVTYEAYNKSPKWQKVSLFDSMFYAGNESDSPHLSYSKLANHEKKVQVGRESNDKSDASPESVLRSLAMTYENTPSIIRKRNSRKACNAANYGKSRTPSTMDVSTPEAGCVFGFDNLKLNQGFVPSFLPRNAME 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00402 427 SUPERFAMILY Homeodomain-like 92 159 IPR009057 -
Trre9g00402 427 CDD SANT 43 85 IPR001005 -
Trre9g00402 427 Gene3D - 133 177 - -
Trre9g00402 427 SUPERFAMILY Homeodomain-like 36 86 IPR009057 -
Trre9g00402 427 Pfam Myb-like DNA-binding domain 43 84 IPR001005 -
Trre9g00402 427 Pfam Myb-like DNA-binding domain 92 132 IPR001005 -
Trre9g00402 427 Pfam Myb-like DNA-binding domain 134 155 IPR001005 -
Trre9g00402 427 Gene3D - 90 132 - -
Trre9g00402 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 162 IPR017930 -
Trre9g00402 427 SMART sant 91 160 IPR001005 -
Trre9g00402 427 SMART sant 39 88 IPR001005 -
Trre9g00402 427 Gene3D - 39 89 - -
Trre9g00402 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 90 IPR017930 -
Trre9g00402 427 ProSiteProfiles Myb-like domain profile. 87 158 IPR001005 -
Trre9g00402 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 132 IPR017930 -
Trre9g00402 427 PANTHER MYB PROTEIN-RELATED 133 259 - -
Trre9g00402 427 CDD SANT 94 135 IPR001005 -
Trre9g00402 427 ProSiteProfiles Myb-like domain profile. 35 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00402 Trre-Chr9 2897425 2905210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00402 13 162 MYB Transcription Factor Family AT3G09370 44.751 3.84e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g00402 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00402 - K09422 psat:127120714 515.768