Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00399 ATGTGGGCGGTGTTTAAAGGAGATACTGAAGATCACATTGAAATGTTGATCAGGGATAAAGAGGGGGACACAATCCAAGCTACAATCATGGGTCCAGAAATGGCGACTTGGAAATCACTGTTGCTTGAAGGGAAAACATACTACATGCGCAACTTCCGCGTGTTTGATAATAGTGCTGACTATAAGGTCACTACGCACAGTTTCCGATTGACCTGTGTCAATGCAACGCGAATTCAGCAAGTTGACATCGCTGGAATTCCACCAACCAAATTCAACTTCAAGGATTTTACTGAGATCCTGTCCGGAAAATACAAAACAGACTACTTAGTTGACGCCATTGGAGTTGTTCATGACATCCGGAAAGTGGTTCCTGCTATGTCTGGTAGGAAAGCCAACGTCGCATTTACCATCAAAGATCTTAGTGATACCATTCTGGATTGCACACTATGGGATGCTCTTTCTGTTGAATTTATGAATCATTACAACCAACGTACTGACTCTGGCCCTGTTGTGTTGATTGTCAAACATGCCCGCATCAAAGATCCGCAAGGTGTCTATCCAGTGCAACTAACCAATGTCTGGGATGGTACAAAGCTGCTGTTTGATCCTGCAATACCTGAGATCAGTTCATTCGTCCAAAGCCTGCCCAAAGATGTAACATACTCCACGCAAAACTCATATGGATCCAGCTCAGCTCTGAAATACACTCAGTCCACTGCTGGTTCACAATTCAACACAGATGAAAATTTCATGAAACAAGCTCGTATTGTTACATTGGCAGAAATGAAGAAACTCAAAGTGGACACTTATTGTGTTACGGTTGCTTCAACTGATAAGATCAAACTCTCAAACCAAGGTTGGTTTTTTTATGGCTGCACTGACTGCTCTTTGAAATGTGACGGAACTGAACCACCGTTTGTTTGTAAGAAGGGCCATCAGACATCTGACCCACTTATCAAGTACAAATTAGATGTTGAGGTGTGTGATTCTACCGACAGCGCAAAATTCGTTTTCTGGGACAGTTCTCTTGATGATATGGTCGGTCTAACAGCAAAAGCCCTGCTTGAACTCCAGCAAAAGAATGGTGTTGATGGCCCACAGGAATATCCGAAAAAACTCGAGGAGCTCATGGACAGGAAGTTTGCATTCCGCGTCAAGTGGCAACCAGGCTGGGGTGGCCAAGCAACCGTGTCCCTCTGTCGGGATAGCACAGATCTGATCAACAAGATCCAAGAACATCTACCTGCTGCCGAGAGTTCGTGCAAAGAAATTCAAGATTTGGACCTCATTGAAGATGAGGTTTCTGCGGTTAATGCTTCATCACAAAACCAGGAATTCACAAGTTCCGACATAGACAAATTTGCTTCCTTGGATGATGCAATTCTATCTACTCCAAATTCGTCCGGAACTGGTGACAATGACCTGTCAGCTTCTACTGTCAAAACTACCGGGAAACGAAGTGCTGGAAAACATATCCAACTTGATGGTACAAACCTTGATTCCCAGTTTTCCTCTACCAGAACTGGGAAGCTGATCAAGAAGGAGAAGCTTTGA 1554 0.4389 MWAVFKGDTEDHIEMLIRDKEGDTIQATIMGPEMATWKSLLLEGKTYYMRNFRVFDNSADYKVTTHSFRLTCVNATRIQQVDIAGIPPTKFNFKDFTEILSGKYKTDYLVDAIGVVHDIRKVVPAMSGRKANVAFTIKDLSDTILDCTLWDALSVEFMNHYNQRTDSGPVVLIVKHARIKDPQGVYPVQLTNVWDGTKLLFDPAIPEISSFVQSLPKDVTYSTQNSYGSSSALKYTQSTAGSQFNTDENFMKQARIVTLAEMKKLKVDTYCVTVASTDKIKLSNQGWFFYGCTDCSLKCDGTEPPFVCKKGHQTSDPLIKYKLDVEVCDSTDSAKFVFWDSSLDDMVGLTAKALLELQQKNGVDGPQEYPKKLEELMDRKFAFRVKWQPGWGGQATVSLCRDSTDLINKIQEHLPAAESSCKEIQDLDLIEDEVSAVNASSQNQEFTSSDIDKFASLDDAILSTPNSSGTGDNDLSASTVKTTGKRSAGKHIQLDGTNLDSQFSSTRTGKLIKKEKL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00399 517 Gene3D - 85 225 IPR012340 -
Trre9g00399 517 Gene3D - 236 413 IPR012340 -
Trre9g00399 517 MobiDBLite consensus disorder prediction 465 486 - -
Trre9g00399 517 Pfam Domain of unknown function DUF223 15 109 IPR003871 -
Trre9g00399 517 Pfam Replication factor-A C terminal domain 283 387 IPR013955 -
Trre9g00399 517 Gene3D - 2 82 IPR012340 -
Trre9g00399 517 CDD RPA1_DBD_A_like 1 78 - -
Trre9g00399 517 CDD RPA1_DBD_B_like 111 216 - -
Trre9g00399 517 SUPERFAMILY Nucleic acid-binding proteins 257 389 IPR012340 -
Trre9g00399 517 MobiDBLite consensus disorder prediction 465 493 - -
Trre9g00399 517 SUPERFAMILY Nucleic acid-binding proteins 8 80 IPR012340 -
Trre9g00399 517 SUPERFAMILY Nucleic acid-binding proteins 91 221 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00399 Trre-Chr9 2870248 2872917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00399 17 385 Core DNA Replication Machinery Family AT5G08020 24.031 4.88e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00399 - - tpra:123884216 646.351