Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00374 ATGAAATTTTTAACTTCATTTTTGTTTCTCTGTTTGTTTTCATCTCTCTTTCTTGTGGATTCTGATTCTCTACCCCCAAATGAAGTTTGGGCACTTACAAGCTTTAAAGAAGCAATCTATGAAGACCCAAATCTAGCTTTATCAAATTGGAATATGTTGGAATCAGATCTTTGTAACTGGTTTGGTGTCACATGCACTATGGCTAGAGATCATGTTATCAAGCTAAATATTTCAGGTTCATCAATGAAGGGCTTTCTTGCAAGAGAATTAGGACAAATCACCTATTTGCAAGAATTAATTTTGCATGGGAACAATCTAATTGGAACAATACCTAAAGAGTTGTGTGTTTTGAAATCTCTCAAGGTGTTGGATTTAGGAATGAATCAGTTAACCGGACCGATTCCTTCAGAGATTGGAAATTTAACTCAACTTGTGAACATAAATCTTCAGTCCAACGGGTTGACTGGTAAATTACCTTCTGAGTTTGGAAATTTGAGATACCTTCAAGAGGTTCGACTCGATAGGAATAAGCTTCAAGGACCTGTTCCTGCTAGTGGCGCTTACAACTTTGCTTCAAATATGCATGGGATGTATACATCAACCGAAAATGCAACTGGCTTTTGTCGATCGCCTCAGTTAAAAATAGCAGACTTTTCGTATAATTTTTTAGTTGGTAGTATACCAAAATGTTTGGAGTTTCTTCCAAAGTCGAGCTTTCAAGGGAACTGCCTCCAGATCAATGATCTAAACCAGCGGCCTTCCATACAATGTGGCGGTGCTTCACCTGCTAAGAGTCAGCCAGTAAGGAACAACCAAGACCACCAAATAGCTGATCATGTAGGCAAGCATCACAGATCATCGAAACCTAGTTGGCTTTTGGCTCTAGAAATAGTAGCAGGAACTATGGTCGGTTCTCTCTTTCTGATTGCTGCTCTCGCTGCTGTCCAGAGATGCAACAACAACAAATCATCCATCATTATTCCTTGGAAAAAATCTGCCAGTCAGAAAGATCACACTACAGTATATATAGACCCGGATATGTTAAAGGACGTGAGAAGGTATAGCAGACAAGAGCTTGAAGAGGCCTGTGAAGACTTCAGCAACATCATTGGGTCCTCACCGGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGATCTGAGATTGCTGTAATTTCCCTTTGCATTAAGGAGGAGCATTGGACAGGATATCTGGAACTCTACTTTCAGAGAGAGGTGGCAGAATTGGCTAGGTTAAATCATGAAAATACTGGAAAACTGCTTGGATATTGTAGAGAGAGCAATCCGTTTTCAAGGATGTTGGTTTTCGACTATGCTTCCAATGGGACGCTTCACGAGCACCTACATTGTTATGAAGAAGGATGCCAGTTCTCTTGGACACGGCGTATGAAAATTGTCATAGGAATTGCTCGTGGACTCAAATATTTGCACACAGAAGTTGAACCTCCATTCACTATCTCAGAGCTTAATTCTAGTGCTGTATACCTTACAGAAGAGTTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTGGTACTATTAGTAGCCAAGGTGCTGTTTGTGTTCTTCCAAACTCCCTCGAGGCACGTCATCATGATACCAAAGGAAACGTATACGCTTTTGGAGTACTTCTACTAGAGATAATCAGCGGGCGACAGCCATACTGTAAGGAAAAAGGATACTTGGTGGATTGGGCTAAAGACTATCTTGAAAAGCCAGAAGTAATGTCACATTTGGTGAATCCAGAATTGAAAATTTTTAAAGATGATGACCTCAAAGTGATATGTGAGGTGATAACTCTTTGCATCAATCCTGATACAACTGTACGTCCATCTATGCGAGAAATATGCAGCATGCTGGAGAGCAGAATCGACACATCAGTAAGCGTGGATCTCAAGTCATCATCTTTAGCTTGGGCTGAACTTGCTCTTTTATCATAA 1992 0.4031 MKFLTSFLFLCLFSSLFLVDSDSLPPNEVWALTSFKEAIYEDPNLALSNWNMLESDLCNWFGVTCTMARDHVIKLNISGSSMKGFLARELGQITYLQELILHGNNLIGTIPKELCVLKSLKVLDLGMNQLTGPIPSEIGNLTQLVNINLQSNGLTGKLPSEFGNLRYLQEVRLDRNKLQGPVPASGAYNFASNMHGMYTSTENATGFCRSPQLKIADFSYNFLVGSIPKCLEFLPKSSFQGNCLQINDLNQRPSIQCGGASPAKSQPVRNNQDHQIADHVGKHHRSSKPSWLLALEIVAGTMVGSLFLIAALAAVQRCNNNKSSIIIPWKKSASQKDHTTVYIDPDMLKDVRRYSRQELEEACEDFSNIIGSSPDSVVYKGTMKGGSEIAVISLCIKEEHWTGYLELYFQREVAELARLNHENTGKLLGYCRESNPFSRMLVFDYASNGTLHEHLHCYEEGCQFSWTRRMKIVIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGTISSQGAVCVLPNSLEARHHDTKGNVYAFGVLLLEIISGRQPYCKEKGYLVDWAKDYLEKPEVMSHLVNPELKIFKDDDLKVICEVITLCINPDTTVRPSMREICSMLESRIDTSVSVDLKSSSLAWAELALLS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00374 663 Gene3D Phosphorylase Kinase; domain 1 337 445 - -
Trre9g00374 663 SUPERFAMILY Protein kinase-like (PK-like) 342 638 IPR011009 -
Trre9g00374 663 PANTHER PROTEIN MALE DISCOVERER 2 9 663 - -
Trre9g00374 663 Gene3D Ribonuclease Inhibitor 26 205 IPR032675 -
Trre9g00374 663 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Trre9g00374 663 FunFam Leucine-rich repeat receptor-like protein kinase 26 184 - -
Trre9g00374 663 Pfam Protein tyrosine and serine/threonine kinase 368 637 IPR001245 GO:0004672|GO:0006468
Trre9g00374 663 SUPERFAMILY L domain-like 25 235 - -
Trre9g00374 663 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Trre9g00374 663 Gene3D Transferase(Phosphotransferase) domain 1 446 653 - -
Trre9g00374 663 FunFam Inactive receptor-like serine/threonine-protein kinase 338 445 - -
Trre9g00374 663 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00374 Trre-Chr9 2656736 2659990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00374 41 642 Receptor kinase-like Gene Family AT5G45780 27.877 9.59e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre9g00374 PK_Tyr_Ser-Thr 1.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00374 - - gmx:100792145 1081.24