Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00371 ATGGCGAAACTATTATCATTAGCTTGTTTTCGAAACGAAGGATGGCACGATCTCTCTGCACGATCTCACTATCCTTCGATGCCTTCTTTCCCCAAAAGTGAGCCTGGTACTCCGAGTACATCCGCCGTGGAACCGTCGACGATGGTGACCGCACTATTCTCCGTCGATGGAATGACTTGTTCGGCTTGCGCTGGATCTGTAGAGAAAGGTATCAAACGGCTCCATGGAATTCAGGAAGCTGTTGTTGATGTTCTCAACAACCGTGCTCGTGTCATCTTTCATCCATCTTTTGTTAACGAAGAAGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCGGCACTACTAACGAACATAACAAACGAGAACACTATTCAAGTATGCCGCATAGAAATAAAAGGAATGACATGCACTTCATGTTCCACCACCGTTGAATCATCGCTAAAAGCTCTCTCCGGTGTCCTCCAAGCTCAAGTAGCTTTAGCAACAGAAGAAGCTCAAGTTCACTACAATCCAAACACCATTACCCACACCCAAATCCTACAAGCCATAGATGATGCTGGTTTTGAAGCCACACTCATTAGTTCAAGTGAAGATTTAAGCAAAATAGACCTCCATGTGGAAGGTGATCTCACTGATCATTCCATGATTGAACTCATTGAAGATTCTCTTAAATCACTCCCTGGTGTTTTAAAGTTACACAAGAATCTTGAACTTCGTAAAATTTCACTTTCTTATAAACCAGATTTAACTGGGCCAAGAGATTTCATTAATGTGATTCATGAAACTAGTAATGGAAATTTGAAAGCCAAAATATTTCCTGGTGAAGGTGGAAGAAGAGATGCTCATAGAAATAAAGAAATTAAAAGCTATTATAAATCTTTTCTATGGAGTTTGGTTTTTACTGTTCCGGTTTTTCTTACTTCCATGGTGTTTATGTATATACCTGGAATAAAAGATTTATTGGATTCAAAAGTTGTGAAAATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTTCGACGCCGGTGCAGTTTGTTTTCGGGTGGCGATTTTATGTTGGTTCTTATAAATCATTGCGCCGTGGTTCTGCGAATATGGATGTTTTGATAGCATTGGGAACAAATGCAGCTTATTTTTATTCTGTTTATTCTGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAGGGGACTGATTTTTTTGAGACTAGTGCTATGCTTATTTCGTTTATTTTACTTGGGAAGTATCTTGAGATTTTGGCTAAAGGGAAGACATCGAATGCGATTGCGAAGTTAATGAATTTGACACCTGATACTGCTATATTGTTGAGTTTGGATGGTGAAGGGAATGTTGTTGGGGAGGAAGAAATTGATAGTAGGTTGGTTCAGAAGAATGATGTGATTAAGATTATTCCGGGTGCCAAAGTTGCTTCTGATGGGCTTGTTGTATGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCACGTCCTGTTTCTAAGAGGAAAGGTGATACTGTTATTGGTGGGACTTTGAATGAGAATGGTGTTTTGCATGTTAAGGCGACAAAAGTTGGATCAGAAAGTGCTCTTTCGCAGATTGTTCGACTTGTTGAGTCGGCTCAGATGGCTAAGGCTCCTGTGCAGAAGTTCGCTGATCGCATTTCCAAATTCTTTGTGCCTTTGGTGATTTTGATCTCATTCTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAAGTATCATGCTTACCCGAAATCGTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCAACGCCTACTGCTGTTATGGTTGGCACTGGTGTTGGTGCATCTCAGGGTGTATTAATCAAAGGAGGGCAAGCTTTGGAAAGTGCGCATAAGGTAAATTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAGCCGGTAATAGTAAATACCAAACTATTGACCAAAATGGTGCTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTTAACAGTGAGCATCCACTAGCTAAGGCTGTTGTTGAGTATGCCAAAAAATTTAAAGATGAAGAGAACCCTTCTTGGCCAGAAGCAAGAGATTTTGTTTCCATTACTGGACATGGAGTGAAGGCCATCGTTCGTAACAAGGAAATAATGGTGGGTAATAAGAGCTTGATGACCGACCATAATATTGCAATTCCAATTGTTGCTGAAGATCTGCTTGCCGAAGCTGAAAATATGGCTCAAACAGGAATTTTAGTATCGATAAATGGGGAAGTAGCTGGGGTTTTAGCAATATCCGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTAACTGGGGACAACTGGGGAACTGCTAATTCCATTGCCAGGGAAGTTGGAATCGAAGATGTTATTGCTGAAGCCAAACCAGATCAAAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACAGTGGCTATGGTGGGGGATGGCATCAATGATTCGCCTGCACTAGTAGCAGCGGATGTAGGAATGGCAATAGGTGCTGGGACAGACATTGCTATTGAGGCAGCTGATATTGTACTGATGAAGAGCAACTTAGAGGATGTGATAACTGCCATTGATCTTTCCAGAAAAACATTTTCTCGTATACGCCTCAATTATGTTTGGGCTTTGGGTTATAATTTGCTTGGCATTCCAATAGCTGCTGGAGTTCTTTTCCCTTCCACAGGCTTTCGATTGCCGCCTTGGATTGCTGGAGCTGCTATGGCTGCGTCTTCTGTCAGTGTTGTTTGCTGTTCTCTATTGTTGAAATATTACAAGAGACCCAAGAAGCTGAATAGCCTTGACATAGGATCCATAACGATCGAGACATCGAGCGACCCTTTGATCATTCATGACGATTGA 3000 0.4173 MAKLLSLACFRNEGWHDLSARSHYPSMPSFPKSEPGTPSTSAVEPSTMVTALFSVDGMTCSACAGSVEKGIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLTNITNENTIQVCRIEIKGMTCTSCSTTVESSLKALSGVLQAQVALATEEAQVHYNPNTITHTQILQAIDDAGFEATLISSSEDLSKIDLHVEGDLTDHSMIELIEDSLKSLPGVLKLHKNLELRKISLSYKPDLTGPRDFINVIHETSNGNLKAKIFPGEGGRRDAHRNKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKDLLDSKVVKMLTIGEVIRWVLSTPVQFVFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLSLDGEGNVVGEEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISKFFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKAIVRNKEIMVGNKSLMTDHNIAIPIVAEDLLAEAENMAQTGILVSINGEVAGVLAISDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGSITIETSSDPLIIHDD 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00371 999 SUPERFAMILY Calcium ATPase, transmembrane domain M 400 927 IPR023298 -
Trre9g00371 999 CDD P-type_ATPase_Cu-like 294 969 - -
Trre9g00371 999 Gene3D - 126 196 - -
Trre9g00371 999 CDD HMA 131 193 IPR006121 GO:0046872
Trre9g00371 999 FunFam Copper-transporting ATPase 1, putative 423 545 - -
Trre9g00371 999 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 982 - -
Trre9g00371 999 Gene3D - 46 117 - -
Trre9g00371 999 SUPERFAMILY Calcium ATPase, transduction domain A 455 541 IPR008250 -
Trre9g00371 999 Pfam E1-E2 ATPase 454 633 - -
Trre9g00371 999 NCBIfam HAD-IC family P-type ATPase 408 943 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre9g00371 999 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Trre9g00371 999 Gene3D - 423 545 - -
Trre9g00371 999 SUPERFAMILY HAD-like 654 965 IPR036412 -
Trre9g00371 999 Pfam Heavy-metal-associated domain 53 113 IPR006121 GO:0046872
Trre9g00371 999 Pfam Heavy-metal-associated domain 131 191 IPR006121 GO:0046872
Trre9g00371 999 ProSiteProfiles Heavy-metal-associated domain profile. 127 193 IPR006121 GO:0046872
Trre9g00371 999 NCBIfam heavy metal translocating P-type ATPase 368 968 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre9g00371 999 ProSitePatterns Heavy-metal-associated domain. 133 162 IPR017969 GO:0046872
Trre9g00371 999 SUPERFAMILY HMA, heavy metal-associated domain 124 197 IPR036163 GO:0046872
Trre9g00371 999 CDD HMA 53 115 IPR006121 GO:0046872
Trre9g00371 999 Gene3D - 740 790 IPR023299 GO:0000166
Trre9g00371 999 Gene3D - 662 739 IPR023299 GO:0000166
Trre9g00371 999 NCBIfam copper ion binding protein 131 192 IPR006122 GO:0005507
Trre9g00371 999 NCBIfam copper ion binding protein 53 114 IPR006122 GO:0005507
Trre9g00371 999 ProSiteProfiles Heavy-metal-associated domain profile. 49 115 IPR006121 GO:0046872
Trre9g00371 999 Gene3D - 622 916 IPR023214 -
Trre9g00371 999 FunFam Probable copper-transporting ATPase HMA5 781 916 - -
Trre9g00371 999 ProSitePatterns Heavy-metal-associated domain. 55 84 IPR017969 GO:0046872
Trre9g00371 999 PRINTS Copper-transporting ATPase 1 signature 50 75 - -
Trre9g00371 999 PRINTS Copper-transporting ATPase 1 signature 151 172 - -
Trre9g00371 999 PRINTS Copper-transporting ATPase 1 signature 105 125 - -
Trre9g00371 999 PRINTS Copper-transporting ATPase 1 signature 76 99 - -
Trre9g00371 999 SUPERFAMILY HMA, heavy metal-associated domain 45 116 IPR036163 GO:0046872
Trre9g00371 999 SFLD C1.7: P-type atpase like 637 911 - -
Trre9g00371 999 SUPERFAMILY HMA, heavy metal-associated domain 201 264 IPR036163 GO:0046872
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 882 894 - -
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 784 795 - -
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 806 816 - -
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Trre9g00371 999 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Trre9g00371 999 Pfam haloacid dehalogenase-like hydrolase 651 873 - -
Trre9g00371 999 FunFam Copper-transporting ATPase HMA5 126 197 - -
Trre9g00371 999 FunFam Copper-transporting ATPase HMA5 48 119 - -
Trre9g00371 999 SFLD p-type atpase 637 911 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00371 Trre-Chr9 2645470 2650377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00371 3 988 Primary Pumps ATPases AT1G63440 75.327 0.0 1512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00371 K17686 - gmx:100816893 1571.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00371 9 2645470 2650377 Trre9g00371 9 2645470 2650377 ECH