Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00370 ATGATAGGTAAAAAGTTTGAGGGTTGGGAATGCATAAATAGAGGGTTGCAGTGCTGTGGGAACTTGTCGCCGGAGCCACACTATCCGTCGATAACGAGGTACCCGAAAGGAACGTCACCGGCAGGGGAAGGATCATCAGAGGCAGCCATAAGTACTGTTGTTTTCTGTGTTATGGGAATGACATGTGCTGCCTGTGCTGGATCTGTGGAGAAAGCCATTAAACGTTTACCTGGAATTCTAGAGGCTATGGTTGATGTCTTGAATGATAAAGCACAAGTTCAATATTATCCCTCCATTGTTAATGAAGAGAAGATATGTGAAGCCATTGAAGATGCTGGTTTTGAGGCCAAATCCATGGGAGAAAGTTCAAACACCGCGTCGCTTCAAATATGTCGAGTACACATAGGCGGCATGACTTGTACGTCTTGCTCCACAAGCGTAGAATCAACTCTTCAATCACTTCGAGGGGTGCAAATAGCGCAAGTGGCGTTAGCAACCGAAGAAGCGGAAATTCATTACAATCCGAATATCATAAGCTATAATCAACTAATGGAAGCTATAGTTGACACAGGTTTTAAACCTGTACTAATAAGCAAAGGAGAACACATTAGCAAAGTTGAACTTAAAATTGATGGCATAAAAAATGAACAATCAATGAATATCATTGAACAATCTCTTAGGAAACTCCAAGGTGTTGAAACCATAGAAACATATCAAGATATTAACAACATTGTCTTAACTTATAAACCTTATATCACAGGACCAAGAACCTTCATTGAAGTTATTGAATCTACAGGATCAGGGTGTTTTAGAGCTGTTATATTTGCAAATGATGGAGGAAGAAAAGCACATAAGCAAGAGGAAATTAATAGATACTTCAAATTATTAATTTGGAGTTTGGCTTTTACTGTTCCTGTTTTTTTGACATCTATGGTTCTTATGTATATACCTGGAATTAAACATATTTTAGAAATCAAAATTGTCAATATGCTGAATATTGGATTGTTAATAAGGTGGGAATTTTCGACACCGGTACAGTTTATCATAGGAAGAAGATTCTATGTTGGAGCTTATAAAGCTTTGAGAAAAGGTTATGCAAACATGGATGTGTTGATAGCTTTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATGTTGTTGGAAGAGCTGTTTTTTCTTCGCATTTCAAAGGTAGTGATTTTTTTGAAACAAGTTCTATGTTGATTTCTTTTATTCTACTAGGGAAGTATTTGGAAGTGTTGGCTAAAGGGAAAACATCACAGGCTATTGCAAAACTTATGGATTTGACACCGGATACAGCAATCTTATTAACTCAAGATGATAAGGGAAATGTTATAGGTGAAAGAGAAATTGATAGTAGGTTGATACAGAAGAATGATGTGATCAAAGTTGTGCCGGGCGCAAAAGTAGCATCGGATGGTTTTGTTGTTTGGGGACAAAGTCATGTGAATGAAAGTATGATAACTGGTGAGGCAAAGCCTGTTGGTAAGATTAAGGGTGATATGGTAATTGGTGGTACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGTAACAAGGGTTGGTTCAGAAAGTGCACTTTCTCAGATTGTTAGACTTGTTGAATCTGCTCAGATGGCTAAGGCTCCTGTTCAGAAATTTGCAGATCAGATTTCTAAATACTTTGTTCCTATAGTGATTGTAATATCTCTTACAACATGGATTTCTTGGTTTATAGCTGGAAAGTTGCATACATATCCAAAATCATGGATACCAAAATCAATGAATAGTTTTGAGCTTGCACTTCAGTTTGGGATTTCAGTAATGGTGATAGCTTGTCCATGTGCTCTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACCGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGTGGTCAAGCATTAGAAAGTGCACACAAAGTGAATTGCATTGTGTTTGATAAGACAGGAACTCTTACTGTTGGAAAGCCATTGGTTGTAACCACAAAACTCTTCAATAATATGTCAGTTAAAGATTTCTATGAATTTGTTGTTGCAGCCGAGGTAAATAGTGAACATCCAATAGCAAAGGCCATTGTTGAGCATGCAAAAAATATTACACAAGATGAAGAAAATCACTTGTGGCCAGAAGCAAAAGATTTTGTATCTGTTGCAGGACATGGAGTGAAGGCCTTAGTTCAAAACAAGCAAATAATGGTTGGTAATAAAAAACTGATGCTAGATCATAACATAGTTATTTCAGTAGAAGCTGAGGAAATACTAGCAGAAGCCGAAAACAAGGCTCAAACCGGGATATTAGTATCATTGGATGGAGAAGTTGTCGGTGTTCTTGCAGTGTCTGATCCATTGAAACCTGATGCAAAAGAAGTTATATCTATTCTTAAATCCATGAAAATAAGGAGCATAATGGTGACAGGTGATAATTGGGGAACTGCAAATTCTATAGCTAGACAAGCCGGTATTGAAACTGTCATGGCAGAGGCTCAACCTGAGACTAAAGCTACTAAAGTAAAAGAATTGCAGAGTTCCGGCTACACAGTAGCGATGGTTGGAGACGGGATAAATGACTCGCCGGCACTAGTAGCAGCTGATGTTGGAATGGCAATAGGTGCTGGAACAGACATAGCTATTGAAGCAGCTGACATTGTTCTCATGAAGAGTAACTTGGAGGATATAATAACAGCCATTGACCTTGCAAAGAAAACTTTCTCTCGTATACGGTTAAATTACATTTGGGCTCTTGGCTACAATCTTCTAGCAATTCCTGTTGCTGCTGGCATTCTTTATCCGTCTACTAAATTTCGGTTACCACCTTGGGTTGCCGGAGCTGCAATGGCGGCCTCTTCTATTAGTGTTGTTTGTTCTTCCCTTTTGTTAAAGAAATATAAGAGACCAAACAAGCTTAACAACTTGGAGATGAATGGTGTTCAGATTGAATGA 2970 0.3859 MIGKKFEGWECINRGLQCCGNLSPEPHYPSITRYPKGTSPAGEGSSEAAISTVVFCVMGMTCAACAGSVEKAIKRLPGILEAMVDVLNDKAQVQYYPSIVNEEKICEAIEDAGFEAKSMGESSNTASLQICRVHIGGMTCTSCSTSVESTLQSLRGVQIAQVALATEEAEIHYNPNIISYNQLMEAIVDTGFKPVLISKGEHISKVELKIDGIKNEQSMNIIEQSLRKLQGVETIETYQDINNIVLTYKPYITGPRTFIEVIESTGSGCFRAVIFANDGGRKAHKQEEINRYFKLLIWSLAFTVPVFLTSMVLMYIPGIKHILEIKIVNMLNIGLLIRWEFSTPVQFIIGRRFYVGAYKALRKGYANMDVLIALGTNAAYFYSVYVVGRAVFSSHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTAILLTQDDKGNVIGEREIDSRLIQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEAKPVGKIKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKFADQISKYFVPIVIVISLTTWISWFIAGKLHTYPKSWIPKSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPLVVTTKLFNNMSVKDFYEFVVAAEVNSEHPIAKAIVEHAKNITQDEENHLWPEAKDFVSVAGHGVKALVQNKQIMVGNKKLMLDHNIVISVEAEEILAEAENKAQTGILVSLDGEVVGVLAVSDPLKPDAKEVISILKSMKIRSIMVTGDNWGTANSIARQAGIETVMAEAQPETKATKVKELQSSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIITAIDLAKKTFSRIRLNYIWALGYNLLAIPVAAGILYPSTKFRLPPWVAGAAMAASSISVVCSSLLLKKYKRPNKLNNLEMNGVQIE 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00370 989 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Trre9g00370 989 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Trre9g00370 989 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Trre9g00370 989 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Trre9g00370 989 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Trre9g00370 989 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Trre9g00370 989 Gene3D - 129 199 - -
Trre9g00370 989 Gene3D - 200 274 - -
Trre9g00370 989 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Trre9g00370 989 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Trre9g00370 989 NCBIfam heavy metal translocating P-type ATPase 368 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre9g00370 989 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 988 - -
Trre9g00370 989 SFLD Haloacid Dehalogenase 637 911 - -
Trre9g00370 989 CDD P-type_ATPase_Cu-like 296 971 - -
Trre9g00370 989 Gene3D - 741 791 IPR023299 GO:0000166
Trre9g00370 989 Gene3D - 662 740 IPR023299 GO:0000166
Trre9g00370 989 CDD HMA 135 194 IPR006121 GO:0046872
Trre9g00370 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Trre9g00370 989 FunFam Probable copper-transporting ATPase HMA5 777 917 - -
Trre9g00370 989 Pfam haloacid dehalogenase-like hydrolase 651 874 - -
Trre9g00370 989 FunFam ATPase copper transporting beta 125 199 - -
Trre9g00370 989 Pfam E1-E2 ATPase 448 633 - -
Trre9g00370 989 SFLD p-type atpase 637 911 IPR044492 -
Trre9g00370 989 SUPERFAMILY Calcium ATPase, transduction domain A 455 541 IPR008250 -
Trre9g00370 989 SUPERFAMILY HMA, heavy metal-associated domain 50 120 IPR036163 GO:0046872
Trre9g00370 989 NCBIfam HAD-IC family P-type ATPase 408 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre9g00370 989 NCBIfam copper ion binding protein 55 116 IPR006122 GO:0005507
Trre9g00370 989 Gene3D - 46 118 - -
Trre9g00370 989 CDD HMA 57 117 IPR006121 GO:0046872
Trre9g00370 989 SUPERFAMILY HMA, heavy metal-associated domain 201 269 IPR036163 GO:0046872
Trre9g00370 989 ProSiteProfiles Heavy-metal-associated domain profile. 204 270 IPR006121 GO:0046872
Trre9g00370 989 SUPERFAMILY HMA, heavy metal-associated domain 126 200 IPR036163 GO:0046872
Trre9g00370 989 FunFam Copper-transporting ATPase 1, putative 423 545 - -
Trre9g00370 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 405 647 IPR023298 -
Trre9g00370 989 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Trre9g00370 989 Gene3D - 622 917 IPR023214 -
Trre9g00370 989 FunFam Copper-transporting ATPase HMA5 50 121 - -
Trre9g00370 989 SUPERFAMILY HAD-like 654 966 IPR036412 -
Trre9g00370 989 Gene3D - 423 545 - -
Trre9g00370 989 Pfam Heavy-metal-associated domain 56 115 IPR006121 GO:0046872
Trre9g00370 989 Pfam Heavy-metal-associated domain 133 193 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00370 Trre-Chr9 2637180 2641906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00370 50 989 Primary Pumps ATPases AT1G63440 71.186 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00370 K17686 - gmx:100817431 1547.33