Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00366 ATGGATGAGAGAGAAGTTATGGCATTTTCTGATGGGTCAGGTTCATATTACATGCATAGAGGAGGAGGGGTTGGTGGGTCAGGTAGTGGAGGAATGTTTCAACAGACACCTTCTGGATTTAGAACTTTGTCTAATGCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGTAGAGGTTCAACATGGTAGTTTTAATCATGGTGGTGTTAGCAATAGCATAGGTTCATCTTCTGGTACTGTAGTGCCTTATTCAAGTGATCAGCCTGTGAAAAAGAAAAGAGGGAGGCCTAGAAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTCTCTCCTATGTCTGCCACTGCTAATTCCACTCCCGATTCGGAGAAAAGGCCGAGAGGGCGCCCTCCTGGAAGTGGAAGGAAGCAACAACTAGCTTCTCTAGGTGAATGGATGAACACTTCTGCTGGACAGGCTTTTTCACCCCATGTTATCACAATCGGAGTTCAGGAGGACATTGTAGCAAAGCTGTTGGCCGTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGTGCTAGTGTCACATATGAGGGGCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCAAAATAGAACTGGTGGCATTAGTGTTTCTCTTTCTAGTCCGGATGGTCATGTTATTGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTACTTTGCAGTTTTGTATATGGTGGCTCTAAGCCGAAGACAACAAAGCAAGGGACAACTACAAAGGATGACGATGATTCAGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCGGAAAGTGCACCACCTAATCAAAACTACACAGCTTCTGGAACAGAAATGTGGCTTGGATCAAGGTCAGTAGATGTGAAAAATGCACATCCACACACTGGTATTGACTTGATGCATGGGTGA 1023 0.4545 MDEREVMAFSDGSGSYYMHRGGGVGGSGSGGMFQQTPSGFRTLSNAHGGSDGSAFSVEVQHGSFNHGGVSNSIGSSSGTVVPYSSDQPVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLASLGEWMNTSAGQAFSPHVITIGVQEDIVAKLLAVSQHRPRALCILSGTGTVSSVTLRQPASTSASVTYEGRFQILCLSGSYLVAEDGGPQNRTGGISVSLSSPDGHVIGGGVARLIAASPVQVVLCSFVYGGSKPKTTKQGTTTKDDDDSEPQSSDKLASPESAPPNQNYTASGTEMWLGSRSVDVKNAHPHTGIDLMHG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00366 340 Gene3D - 156 283 - -
Trre9g00366 340 MobiDBLite consensus disorder prediction 66 84 - -
Trre9g00366 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 269 IPR005175 -
Trre9g00366 340 CDD DUF296 156 268 IPR005175 -
Trre9g00366 340 MobiDBLite consensus disorder prediction 280 295 - -
Trre9g00366 340 MobiDBLite consensus disorder prediction 296 316 - -
Trre9g00366 340 MobiDBLite consensus disorder prediction 276 316 - -
Trre9g00366 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
Trre9g00366 340 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677
Trre9g00366 340 PRINTS AT-hook-like domain signature 122 133 IPR017956 GO:0003677
Trre9g00366 340 MobiDBLite consensus disorder prediction 66 139 - -
Trre9g00366 340 ProSiteProfiles PPC domain profile profile. 151 290 IPR005175 -
Trre9g00366 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 303 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00366 Trre-Chr9 2621589 2624561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00366 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.340 3.83e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00366 - - tpra:123911083 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00366 9 2621589 2624561 Trre7g05430 7 60239953 60243090 PCT