Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00364 | ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGTGTAGTAGGTCCAAATCTAAGTGTTTCATCTCCGACTATACCATCGGCGCCGGTATATTATCCTACTGACGATGAATTCAAAGATCCTTTAGAATTTATTCATAAGATTAGACATGAAGCTGAACCTTTTGGAATTTGTAGAATTGTTCCTCCTAATAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAAGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGTTGTTTAATGCCGTTAAACGGTTTGGGGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTCGGTTTGTGAAATCTTCGGGGAAAATTTCCGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAATTTTTGTAATCGGATTAATAAAGGAACGAATGGGAATTGTTGTAAGAAAAGTGTACAAGAGGATTGTAAGAGTGATCATGGGGTACAAACTTCGGTCAGTTCGGCGTCCAAGAAGCATCATGGGGTTGTAGATGGTTTAAAAGGTAAGGATAAGAAAGCAAGGGAAGAAAACCGTGATCAGATTTGTGAGCAATGTAAAAGTGGGCTGCACGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGCTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCATTGGAAACTTTTAAACGCACTGCGGATAGGTCAAGGAGGAGGTGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTTGGTGAGGTCGAGGTTATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTAATGGTACCATGGATGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAATCAAGCCAGGGCATTTGAGAAGGTTATGAGAAGCAGCCTTCCCGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGCGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCACGAAGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATGGAAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTTGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGTTTAGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCTGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGCGAGTGCAAAACTTCTAAACTTCGTCTTCTCTACCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAACGATACTTCTGAAGAGAAAGTTGAGAGTAGAAATGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGCAGCTCTATTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAACGTTTTTGTGACTGATTCGTCTGTTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTAGAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGGTAAAAGATTGTGTGACAAAAATTGAGTTATGGTTGAGTCATCAGGACTTAAGTTTAAAGAAAGTTCAGTTAGAATATGTTGATGAGTTACTGAGATTTGACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCGAGAATGTTAGTTCAGGAGATTGAAGCTGCTTTGTCAATGCGTTCCAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACATGAAAGAGACTAAAAAATTAGAAGGGAAAATTTCTTCAACCAAGGCATGGATGGGTAGTGTCAGAAACTGCATCTCAGCTAGTGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAATGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTAATAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTTGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAAGAATGGGACAGTTTTACAGTTGATGTACCGGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAACAATGTTTTAGAGAGAGTTCACAGACAGGAAGATCAACATAATGCATTTGATGAATTGAAGAGCATTCTTGAAGCAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCGAAGGCACATGATTCAAAGATGCCCCCGGAATTCATTCAGCAACTGCTGAAGGAGGCCATTATGCTAGGAATTGAGGGAGAGAAGCAATTCACCAGTTTATCTTGTGTGCTTGGTGTCTCCATGCGTTGGGAGGAAAGGGCTGGAGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCGGAAAATATATTTATTATTCTTGCTTCACTTAATGATGTCAAAGAAGCATTATCGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTATCTTCTAATTGTGGCTCAAACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTGTTTGAATTGGATAACACTGTTCATGGAATAAGCAGTGATTTATTGTTTGAAGTGGAAGATTTGATTGCAAGAATCCAGTCTGCCATATCATCTGGTGTATCTCTCGGTTTTGACTTCGGTGATATTTCAAAACTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAACCATTCTCCTTCCTTAGAGGATGTTTTGGAAGTTGTGGACGGCCTCTCTCATTCCTCTTTTTCTGGTGCTCTATTGAATGTACTGATTGATGCGGTTGAGTGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGCAAATTGACTGATATTGAAGATATTCTTACTGATTATCGGACTATTAAAATGACCTTTACGGAAGCAAATTGTCAACTTGAAGAAGCCATTGGAAAACATAGGTTGTGGCAAGAACAAGTGGATAAATTTAATAGACTAAGTTCTAGGGAACGAACTTGGTCATCAATTTTGCAGCTCAAGGAACTGGGGGATTCCATTGCCTTTCGTTGTCCAGAACTTGATTTAATATCATCTGAAGTCGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAATATTGGACCTTTATTTCAAAATGAAAATTCACTTCTTCATGCACTGCAGAAGATAAATCAGACTCTAGATAGATCACTATACATATATGGCAAGTTACAAATTCGGAAGGAGCCAAACCTATGTAACTGCTGCTTTGTTAATTCTGAAGATCAGGAATCTCTTATTTGTTCCACTTGTATGGACCGCTATCACTTGCAGTGCATTGGACTAACAGCAAAAGACACTGGCCTTGGAGACTATAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCACAGTATTCAAATGGAAGTTCCCTCCTGAGGGTTGAGAAGCATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACATTTCTCTTTCTGGGTTGACGAAAGAGATCTTCTGAAACAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCTTTCATCGGCTTATGTCAATGAAGATATTTCCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGGGAATTGTGACCTTGAGCTGGCTTTAGCAAGATACTTGTGGAAAATTCAAGTAAATATATTGTTAAGTGGTGAACAAAAGCCCACTGTTGAACAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCACCCAAAGATCACTATATGCTGAAACTTACAAATGTGAATTGCTTGGGCTTGCACTGGGTAGAACTAGCCAACAAGATATCAAATGATTCTGGAGCACTCAGCCTAGATAAAGTATATGAACTTGTAGTGGAAGGCGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATCGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAGTTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTACCCCATGCACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGATATGTTTGCACCCAGGAATGAAGATGGTAGTGATTTTAGGTATTCAAATGGGACAAAATGTCTAAGATGGAAAAATCGAAAACCGTTTAGAAGAGTAACTAAAAGACGTCTTGAACTTCAAAGTCTTTCTCCATTTCTATGCATAAAACGATAA | 5487 | 0.3988 | MGKGKPRAVEKGVVGPNLSVSSPTIPSAPVYYPTDDEFKDPLEFIHKIRHEAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYENFCNRINKGTNGNCCKKSVQEDCKSDHGVQTSVSSASKKHHGVVDGLKGKDKKAREENRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWMYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRFHKTAVLSHEELLCVVAQYGDVDGRGSSYLKAELLTIIDREKSLREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSIDNDTSEEKVESRNVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDSSVTALRKAEQFLWAGSEMDSVRDMVESLTEAQKWAEGVKDCVTKIELWLSHQDLSLKKVQLEYVDELLRFDPVPCNEPHYHKLKEYAEEARMLVQEIEAALSMRSNMSELELLYSRACGLPIYMKETKKLEGKISSTKAWMGSVRNCISASDPAELDVDVLYKLMSEIADLQVQLPEIDALQNLINQAESCSSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNNVLERVHRQEDQHNAFDELKSILEAGLSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPPEFIQQLLKEAIMLGIEGEKQFTSLSCVLGVSMRWEERAGEILSLEASISDFEDMIRASENIFIILASLNDVKEALSEANSWLRNSKPYLVSSNCGSNSVRKVEDLQLLVSQSKHLKVSLEERRMLELVLNNCKKWECEAHSLLDDAQCLFELDNTVHGISSDLLFEVEDLIARIQSAISSGVSLGFDFGDISKLQASCSTLQWCKRALCFCNHSPSLEDVLEVVDGLSHSSFSGALLNVLIDAVEWLRRALEGISRPCNSRRCKLTDIEDILTDYRTIKMTFTEANCQLEEAIGKHRLWQEQVDKFNRLSSRERTWSSILQLKELGDSIAFRCPELDLISSEVEKVENWKKRCMDNIGPLFQNENSLLHALQKINQTLDRSLYIYGKLQIRKEPNLCNCCFVNSEDQESLICSTCMDRYHLQCIGLTAKDTGLGDYKCSYCEILKGKSQYSNGSSLLRVEKHIELNILVELLSDAEHFSFWVDERDLLKQLIEKAFACKSGLREIVNLSSAYVNEDISIISEKLTIAIKASKVAGVYDQGGNCDLELALARYLWKIQVNILLSGEQKPTVEQIQKHLKEGMSMEISPKDHYMLKLTNVNCLGLHWVELANKISNDSGALSLDKVYELVVEGENLPVDVNEELRMLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACTPCTGLPTNHDRLTTGKLEEPKTPSPRHTNPRKKQKRDMFAPRNEDGSDFRYSNGTKCLRWKNRKPFRRVTKRRLELQSLSPFLCIKR | 1828 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00364 | 1828 | Coils | Coil | 825 | 845 | - | - | |
Trre9g00364 | 1828 | SMART | PHD_3 | 1699 | 1741 | IPR001965 | - | |
Trre9g00364 | 1828 | SMART | PHD_3 | 1443 | 1489 | IPR001965 | - | |
Trre9g00364 | 1828 | SMART | PHD_3 | 247 | 293 | IPR001965 | - | |
Trre9g00364 | 1828 | ProSitePatterns | Zinc finger PHD-type signature. | 1700 | 1740 | IPR019786 | - | |
Trre9g00364 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 295 | IPR013083 | - | |
Trre9g00364 | 1828 | Pfam | jmjN domain | 29 | 62 | IPR003349 | - | |
Trre9g00364 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 1440 | 1490 | IPR011011 | - | |
Trre9g00364 | 1828 | SMART | bright_3 | 96 | 190 | IPR001606 | GO:0003677 | |
Trre9g00364 | 1828 | CDD | PHD_SF | 1444 | 1488 | - | - | |
Trre9g00364 | 1828 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 23 | 1027 | - | - | |
Trre9g00364 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 241 | 295 | IPR011011 | - | |
Trre9g00364 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1685 | 1742 | IPR013083 | - | |
Trre9g00364 | 1828 | SMART | JmjN_1 | 27 | 68 | IPR003349 | - | |
Trre9g00364 | 1828 | CDD | PHD_RSF1 | 248 | 292 | - | - | |
Trre9g00364 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 1694 | 1747 | IPR011011 | - | |
Trre9g00364 | 1828 | Gene3D | - | 78 | 197 | IPR036431 | GO:0003677 | |
Trre9g00364 | 1828 | CDD | ARID | 97 | 185 | - | - | |
Trre9g00364 | 1828 | Pfam | C5HC2 zinc finger | 628 | 679 | IPR004198 | - | |
Trre9g00364 | 1828 | Pfam | ARID/BRIGHT DNA binding domain | 101 | 185 | IPR001606 | GO:0003677 | |
Trre9g00364 | 1828 | Gene3D | Cupin | 28 | 536 | - | - | |
Trre9g00364 | 1828 | Pfam | PHD-finger | 247 | 294 | IPR019787 | - | |
Trre9g00364 | 1828 | Pfam | PLU-1-like protein | 894 | 1040 | IPR013637 | - | |
Trre9g00364 | 1828 | Pfam | PLU-1-like protein | 1143 | 1418 | IPR013637 | - | |
Trre9g00364 | 1828 | Pfam | PLU-1-like protein | 725 | 885 | IPR013637 | - | |
Trre9g00364 | 1828 | Pfam | PLU-1-like protein | 946 | 1184 | IPR013637 | - | |
Trre9g00364 | 1828 | SUPERFAMILY | Clavaminate synthase-like | 341 | 566 | - | - | |
Trre9g00364 | 1828 | ProSiteProfiles | JmjN domain profile. | 28 | 69 | IPR003349 | - | |
Trre9g00364 | 1828 | FunFam | Transcription factor jumonji (JmjC) domain-containing protein | 14 | 118 | - | - | |
Trre9g00364 | 1828 | ProSiteProfiles | ARID domain profile. | 95 | 189 | IPR001606 | GO:0003677 | |
Trre9g00364 | 1828 | ProSiteProfiles | Zinc finger PHD-type profile. | 245 | 295 | IPR019787 | - | |
Trre9g00364 | 1828 | MobiDBLite | consensus disorder prediction | 1754 | 1791 | - | - | |
Trre9g00364 | 1828 | SUPERFAMILY | ARID-like | 78 | 192 | IPR036431 | GO:0003677 | |
Trre9g00364 | 1828 | ProSitePatterns | Zinc finger PHD-type signature. | 248 | 292 | IPR019786 | - | |
Trre9g00364 | 1828 | ProSiteProfiles | JmjC domain profile. | 385 | 551 | IPR003347 | - | |
Trre9g00364 | 1828 | Pfam | JmjC domain, hydroxylase | 418 | 534 | IPR003347 | - | |
Trre9g00364 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1385 | 1492 | IPR013083 | - | |
Trre9g00364 | 1828 | SMART | ARID_2 | 95 | 185 | - | - | |
Trre9g00364 | 1828 | SMART | cupin_9 | 385 | 551 | IPR003347 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00364 | Trre-Chr9 | 2590073 | 2613247 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00364 | 37 | 92 | JUMONJI Transcription Factor Family | AT4G20400 | 48.333 | 3.29e-09 | 60.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Trre9g00364 | PLU-1 | 9.7e-16 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00364 | K11446 | - | gmx:100789512 | 2963.71 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre9g00364 | 9 | 2590073 | 2613247 | Trre9g00364 | 9 | 2590073 | 2613247 | ECH |