Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00363 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGTGTAGTAGGTCCAAATCTAAGTGTTTCATCTCCGACTATACCATCGGCGCCGGTATATTATCCTACTGACGATGAATTCAAAGATCCTTTAGAATTTATTCATAAGATTAGACATGAAGCTGAACCTTTTGGAATTTGTAGAATTGTTCCTCCTAATAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAAGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGTTGTTTAATGCCGTTAAACGGTTTGGGGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTCGGTTTGTGAAATCTTCGGGGAAAATTTCCGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAATTTTTGTAATCGGATTAATAAAGGAACGAATGGGAATTGTTGTAAGAAAAGTGTACAAGAGGATTGTAAGAGTGATCATGGGGTACAAACTTCGGTCAGTTCGGCGTCCAAGAAGCATCATGGGGTTGTAGATGGTTTAAAAGGTAAGGATAAGAAAGCAAGGGAAGAAAACCGTGATCAGATTTGTGAGCAATGTAAAAGTGGGCTGCACGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGCTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCATTGGAAACTTTTAAACGCACTGCGGATAGGTCAAGGAGGAGGTGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTTGGTGAGGTCGAGGTTATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTAATGGTACCATGGATGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAATCAAGCCAGGGCATTTGAGAAGGTTATGAGAAGCAGCCTTCCCGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGCGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCACGAAGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATGGAAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTTGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGTTTAGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCTGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGCGAGTGCAAAACTTCTAAACTTCGTCTTCTCTACCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAACGATACTTCTGAAGAGAAAGTTGAGAGTAGAAATGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGCAGCTCTATTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAACGTTTTTGTGACTGATTCGTCTGTTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTAGAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGGTAAAAGATTGTGTGACAAAAATTGAGTTATGGTTGAGTCATCAGGACTTAAGTTTAAAGAAAGTTCAGTTAGAATATGTTGATGAGTTACTGAGATTTGACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCGAGAATGTTAGTTCAGGAGATTGAAGCTGCTTTGTCAATGCGTTCCAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACATGAAAGAGACTAAAAAATTAGAAGGGAAAATTTCTTCAACCAAGATCAATCAGGCATGGATGGGTAGTGTCAGAAACTGCATCTCAGCTAGTGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAATGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTAATAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTTGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAAGAATGGGACAGTTTTACAGTTGATGTACCGGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAACAATGTTTTAGAGAGAGTTCACAGACAGGAAGATCAACATAATGCATTTGATGAATTGAAGAGCATTCTTGAAGCAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCGAAGGCACATGATTCAAAGATGCCCCCGGAATTCATTCAGCAACTGCTGAAGGAGGCCATTATGCTAGGAATTGAGGGAGAGAAGCAATTCACCAGTTTATCTTGTGTGCTTGGTGTCTCCATGCGTTGGGAGGAAAGGGCTGGAGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCGGAAAATATATTTATTATTCTTGCTTCACTTAATGATGTCAAAGAAGCATTATCGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTATCTTCTAATTGTGGCTCAAACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTGTTTGAATTGGATAACACTGTTCATGGAATAAGCAGTGATTTATTGTTTGAAGTGGAAGATTTGATTGCAAGAATCCAGTCTGCCATATCATCTGGTGTATCTCTCGGTTTTGACTTCGGTGATATTTCAAAACTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAACCATTCTCCTTCCTTAGAGGATGTTTTGGAAGTTGTGGACGGCCTCTCTCATTCCTCTTTTTCTGGTGCTCTATTGAATGTACTGATTGATGCGGTTGAGTGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGCAAATTGACTGATATTGAAGATATTCTTACTGATTATCGGACTATTAAAATGACCTTTACGGAAGCAAATTGTCAACTTGAAGAAGCCATTGGAAAACATAGGTTGTGGCAAGAACAAGTGGATAAATTTAATAGACTAAGTTCTAGGGAACGAACTTGGTCATCAATTTTGCAGCTCAAGGAACTGGGGGATTCCATTGCCTTTCGTTGTCCAGAACTTGATTTAATATCATCTGAAGTCGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAATATTGGACCTTTATTTCAAAATGAAAATTCACTTCTTCATGCACTGCAGAAGATAAATCAGACTCTAGATAGATCACTATACATATATGGCAAGTTACAAATTCGGAAGGAGCCAAACCTATGTAACTGCTGCTTTGTTAATTCTGAAGATCAGGAATCTCTTATTTGTTCCACTTGTATGGACCGCTATCACTTGCAGTGCATTGGACTAACAGCAAAAGACACTGGCCTTGGAGACTATAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCACAGTATTCAAATGGAAGTTCCCTCCTGAGGGTTGAGAAGCATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACATTTCTCTTTCTGGGTTGACGAAAGAGATCTTCTGAAACAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCTTTCATCGGCTTATGTCAATGAAGATATTTCCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGGGAATTGTGACCTTGAGCTGGCTTTAGCAAGATACTTGTGGAAAATTCAAGTAAATATATTGTTAAGTGGTGAACAAAAGCCCACTGTTGAACAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCACCCAAAGATCACTATATGCTGAAACTTACAAATGTGAATTGCTTGGGCTTGCACTGGGTAGAACTAGCCAACAAGATATCAAATGATTCTGGAGCACTCAGCCTAGATAAAGTATATGAACTTGTAGTGGAAGGCGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATCGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAGTTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTACCCCATGCACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGATATGTTTGCACCCAGGAATGAAGATGGTAGTGATTTTAGGTATTCAAATGGGACAAAATGTCTAAGATGGAAAAATCGAAAACCGTTTAGAAGAGTAACTAAAAGACGTCTTGAACTTCAAAGTCTTTCTCCATTTCTATGCATAAAACGATAA 5496 0.3987 MGKGKPRAVEKGVVGPNLSVSSPTIPSAPVYYPTDDEFKDPLEFIHKIRHEAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYENFCNRINKGTNGNCCKKSVQEDCKSDHGVQTSVSSASKKHHGVVDGLKGKDKKAREENRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWMYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRFHKTAVLSHEELLCVVAQYGDVDGRGSSYLKAELLTIIDREKSLREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSIDNDTSEEKVESRNVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDSSVTALRKAEQFLWAGSEMDSVRDMVESLTEAQKWAEGVKDCVTKIELWLSHQDLSLKKVQLEYVDELLRFDPVPCNEPHYHKLKEYAEEARMLVQEIEAALSMRSNMSELELLYSRACGLPIYMKETKKLEGKISSTKINQAWMGSVRNCISASDPAELDVDVLYKLMSEIADLQVQLPEIDALQNLINQAESCSSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNNVLERVHRQEDQHNAFDELKSILEAGLSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPPEFIQQLLKEAIMLGIEGEKQFTSLSCVLGVSMRWEERAGEILSLEASISDFEDMIRASENIFIILASLNDVKEALSEANSWLRNSKPYLVSSNCGSNSVRKVEDLQLLVSQSKHLKVSLEERRMLELVLNNCKKWECEAHSLLDDAQCLFELDNTVHGISSDLLFEVEDLIARIQSAISSGVSLGFDFGDISKLQASCSTLQWCKRALCFCNHSPSLEDVLEVVDGLSHSSFSGALLNVLIDAVEWLRRALEGISRPCNSRRCKLTDIEDILTDYRTIKMTFTEANCQLEEAIGKHRLWQEQVDKFNRLSSRERTWSSILQLKELGDSIAFRCPELDLISSEVEKVENWKKRCMDNIGPLFQNENSLLHALQKINQTLDRSLYIYGKLQIRKEPNLCNCCFVNSEDQESLICSTCMDRYHLQCIGLTAKDTGLGDYKCSYCEILKGKSQYSNGSSLLRVEKHIELNILVELLSDAEHFSFWVDERDLLKQLIEKAFACKSGLREIVNLSSAYVNEDISIISEKLTIAIKASKVAGVYDQGGNCDLELALARYLWKIQVNILLSGEQKPTVEQIQKHLKEGMSMEISPKDHYMLKLTNVNCLGLHWVELANKISNDSGALSLDKVYELVVEGENLPVDVNEELRMLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACTPCTGLPTNHDRLTTGKLEEPKTPSPRHTNPRKKQKRDMFAPRNEDGSDFRYSNGTKCLRWKNRKPFRRVTKRRLELQSLSPFLCIKR 1831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00363 1831 Coils Coil 825 845 - -
Trre9g00363 1831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 295 IPR013083 -
Trre9g00363 1831 Pfam jmjN domain 29 62 IPR003349 -
Trre9g00363 1831 CDD PHD_SF 1447 1491 - -
Trre9g00363 1831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1388 1495 IPR013083 -
Trre9g00363 1831 SMART bright_3 96 190 IPR001606 GO:0003677
Trre9g00363 1831 SUPERFAMILY FYVE/PHD zinc finger 241 295 IPR011011 -
Trre9g00363 1831 SMART JmjN_1 27 68 IPR003349 -
Trre9g00363 1831 SMART PHD_3 247 293 IPR001965 -
Trre9g00363 1831 SMART PHD_3 1702 1744 IPR001965 -
Trre9g00363 1831 SMART PHD_3 1446 1492 IPR001965 -
Trre9g00363 1831 CDD PHD_RSF1 248 292 - -
Trre9g00363 1831 Gene3D - 78 197 IPR036431 GO:0003677
Trre9g00363 1831 SUPERFAMILY FYVE/PHD zinc finger 1697 1750 IPR011011 -
Trre9g00363 1831 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1023 - -
Trre9g00363 1831 SUPERFAMILY FYVE/PHD zinc finger 1443 1493 IPR011011 -
Trre9g00363 1831 CDD ARID 97 185 - -
Trre9g00363 1831 Pfam C5HC2 zinc finger 628 679 IPR004198 -
Trre9g00363 1831 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Trre9g00363 1831 Gene3D Cupin 28 536 - -
Trre9g00363 1831 Pfam PHD-finger 247 294 IPR019787 -
Trre9g00363 1831 SUPERFAMILY Clavaminate synthase-like 341 566 - -
Trre9g00363 1831 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Trre9g00363 1831 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Trre9g00363 1831 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Trre9g00363 1831 Pfam PLU-1-like protein 950 1186 IPR013637 -
Trre9g00363 1831 Pfam PLU-1-like protein 897 1043 IPR013637 -
Trre9g00363 1831 Pfam PLU-1-like protein 1147 1421 IPR013637 -
Trre9g00363 1831 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Trre9g00363 1831 SUPERFAMILY ARID-like 78 192 IPR036431 GO:0003677
Trre9g00363 1831 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Trre9g00363 1831 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Trre9g00363 1831 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Trre9g00363 1831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1688 1745 IPR013083 -
Trre9g00363 1831 SMART ARID_2 95 185 - -
Trre9g00363 1831 ProSitePatterns Zinc finger PHD-type signature. 1703 1743 IPR019786 -
Trre9g00363 1831 SMART cupin_9 385 551 IPR003347 -
Trre9g00363 1831 MobiDBLite consensus disorder prediction 1757 1794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00363 Trre-Chr9 2590073 2613247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00363 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 3.30e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre9g00363 PLU-1 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00363 K11446 - gmx:100789512 2958.32