Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00352 ATGGGATTTCCAACAGAGATTGTGTTGCCAAAGGTGTTTGTGCAGTTCCTTTCTGTACTGTCTTTCATCAGAAAACTCATTTCAATCCTCTTCTTTTATATTGGTCTCAATTCCGAATTTCCTTTTTCAGAGACTATACCTGAATTTTCACCGGTGAATCCTCTTATTCTGATAAGAGAAATTCTACCGGTGGTAAAGTTCTCGGAGCTGACGACAGTAGAATACTTGGCGGAGAACTGCACCGTCTGTCTCTGCGAGTTTAAGGCGGAAGACGAGATCCAACGGCTTGTAAACTGCCGTCATATCTTTCATCGGAATTGCATCGACCGTTGGACGGGATATGATCACATAACATGTCCTTTGTGTCGCACAAAGATTCTACCTCATCATCATATGCAAGATGCATAA 408 0.4216 MGFPTEIVLPKVFVQFLSVLSFIRKLISILFFYIGLNSEFPFSETIPEFSPVNPLILIREILPVVKFSELTTVEYLAENCTVCLCEFKAEDEIQRLVNCRHIFHRNCIDRWTGYDHITCPLCRTKILPHHHMQDA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00352 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 128 IPR013083 -
Trre9g00352 135 SUPERFAMILY RING/U-box 60 130 - -
Trre9g00352 135 PANTHER - 3 131 IPR044249 -
Trre9g00352 135 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
Trre9g00352 135 SMART ring_2 80 122 IPR001841 -
Trre9g00352 135 Pfam Ring finger domain 79 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00352 Trre-Chr9 2531342 2531749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00352 1 130 C3H Transcription Factor Family AT1G63840 49.296 2.91e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00352 K16281 - gmx:100799478 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00352 9 2531342 2531749 Trre9g00352 9 2531342 2531749 ECH
Trre9g00352 9 2531342 2531749 Trre7g05478 7 60537366 60537851 PCT