Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00346 ATGATCATTTCCGAGAAGAACCGTAGAGAGATCTCGAAATACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGATTACAATTTGGCTAAGCATCCAGAGATTGATGTACCAAATCTGCAAGTGATTAAGCTTATGCAGAGTTTCAAATCTAGAGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTATTGGTTTTTGACCAATGATGGAATTGAGTTCCTTAGAACTTATCTCAATCTTCCATCTGAGATTGTTCCAGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGAAGGCCTTTCGGCGGTCCACCTGGTGATCGCCCTAGAGGCCCACCTAGATTTGAAGGTGAAAGAAGATTTGGTGGTGATCGTGATGGATACCGTGGAGGTCAAAGAGGACCTGGTGGTGAATTTGGAGGAGAGAAGGGAGGAGCTCCAGCTGACTATAGACCTTCCTTTGGGGGTCCTGGAGGAAGACCTGGTTTTGGTCGTGGTTCTGGAGCACCAACTAGCTCAAATGATGCTTAA 534 0.4513 MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGQRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGAPTSSNDA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00346 177 MobiDBLite consensus disorder prediction 112 128 - -
Trre9g00346 177 FunFam 40S ribosomal protein S10 1 104 - -
Trre9g00346 177 Pfam Plectin/S10 domain 3 94 IPR005326 -
Trre9g00346 177 PANTHER 40S RIBOSOMAL PROTEIN S10 1 169 IPR037447 -
Trre9g00346 177 Gene3D - 1 104 IPR036388 -
Trre9g00346 177 MobiDBLite consensus disorder prediction 91 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00346 Trre-Chr9 2496864 2498469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00346 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 80.645 1.51e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00346 K02947 - csv:101212088 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00346 9 2496864 2498469 Trre9g00346 9 2496864 2498469 ECH
Trre9g00346 9 2496864 2498469 Trre7g05484 7 60614891 60616489 PCT