Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00345 ATGGGTCACCATTCATGCTGCAATCAACAGAAGGTTAAAAGAGGGCTTTGGTCACCTGAGGAAGATGAGAAACTCATTAGATATATTTCCACTCATGGTTATGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGGTTGAGATGGATTAATTATTTAAGACCTGATATTAGAAGAGGAAGATTTACACCTGAGGAGGAGAAATTAATTATAAGCCTCCATGGGGCTGTTGGCAACAGATGGGCTCATATTGCAAGCCACTTGCCAGGTAGAACGGACAACGAAATAAAAAACTATTGGAATTCATGGATCAAAAAGAAAATTAGAAAGTCGTCTTCTTCTTCATCTATTAATTCATCAATCAATGCACCAAGTGTTGATCATCATCATCACCATTCTCATCATTCTCAGTTCAATTACAATTCCAATCAACTAGATAATTATTTCACCAACCATGAAAATGTAACATCAACAAAAGAAACCTTATTTTCTTCAACATTTCCTTCATTTATGTTTGACACAAGTTCATTACATGAAACAACATCAACAATAGACACCAATGTAATAAGACCAGAAATACTATTCCATAATGATACTATGAGTTTGAGTTCTGAAACATGGAACTTGAATCACCATGCACTTCCTCCTCCTCATCCTGCATCATCGGCTTTTACCGGAACCATTCATGATTATAATCTGCCACCATTGATAGAGAATAATGTGGAAAACATGATGCAATCTTGTAATATGGATCATGAGGAAGGAGGAGAGATATTAACATTGGAATCAATGCAAAGACAAGAGTTGAATGAATGGGTGGAAAATCAACAACAACAATGTTCTACTCCTAGCTTTATTTTCAGCTGGGAAAATGTTGAAAGACAAATTATTGGAGGTGATGATGAAGAACAATTACTAGTACCAAACTCATTACCACATATGGGAACAATTAATTCATCACTTTCTCCTTTTCCTTCTTCATTATTATAA 1014 0.359 MGHHSCCNQQKVKRGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGAVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSSINSSINAPSVDHHHHHSHHSQFNYNSNQLDNYFTNHENVTSTKETLFSSTFPSFMFDTSSLHETTSTIDTNVIRPEILFHNDTMSLSSETWNLNHHALPPPHPASSAFTGTIHDYNLPPLIENNVENMMQSCNMDHEEGGEILTLESMQRQELNEWVENQQQQCSTPSFIFSWENVERQIIGGDDEEQLLVPNSLPHMGTINSSLSPFPSSLL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00345 337 MobiDBLite consensus disorder prediction 123 145 - -
Trre9g00345 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre9g00345 337 Gene3D - 6 66 - -
Trre9g00345 337 CDD SANT 17 61 IPR001005 -
Trre9g00345 337 SMART sant 13 63 IPR001005 -
Trre9g00345 337 SMART sant 66 114 IPR001005 -
Trre9g00345 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre9g00345 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre9g00345 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre9g00345 337 FunFam MYB transcription factor 6 66 - -
Trre9g00345 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre9g00345 337 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre9g00345 337 CDD SANT 69 111 IPR001005 -
Trre9g00345 337 Gene3D - 69 144 - -
Trre9g00345 337 FunFam Transcription factor MYB26 68 140 - -
Trre9g00345 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre9g00345 337 PANTHER MYB DOMAIN PROTEIN 55 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00345 Trre-Chr9 2491400 2493149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00345 1 322 MYB Transcription Factor Family AT1G63910 48.626 1.86e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g00345 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00345 K09422 K02947 gmx:100797787 362.844