Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00340 ATGGCTCAAGAAATTGAGAACAAAGCCAAAGAAGCGTTTTTCGACGATGACTTCTCTCTCGCCGTTGATCTCTACTCTCAGGCTATCGATTTGGATCCTAACAACCCTAATCTCTTCGCCGATAGAGCACAAGCTTATATCAAACTCAACTCTTTCACTGAAGCTGTTTCCGATGCTAATAAGGCTATTCTGTTAAACCCTACTTTATCTAAAGCTTATCTTAGAAAAGGGACTGCTTGTTTTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGTGTTTCTTTTGCACCTAATGATTCCAGATTTACTAATTTGATTCAACAATGTGAACGCCACATTGCTGCTGAGGAATCAGATAGTCTTGTTGGCATCCTACCACCAAATGGAACCAAAACATCTGTACCGCCTGTTGCTGCTGATACCCATATGTGTGATAAAAGTGATGGAACATCCAAAGAACCTCAAAGAGACATTCCTGCATCCCAAACTAATGAAGCTGCGCCAACCAGACCAAAATACAGACATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGCAGAAAATGTGGCTGTGGAGTTTGGTGAACAAATTCTGAGTGTTACCATTAATGTTCCTGGTCAAGATGCTTATCAATATCAACCTCGATTGTTTGGAAAGATAACACCTGATAAGTGCAAAGTTGTGGTGTTGTCAACCAAAATTGAAATACGTCTGGCAAAAGCTGAAGCTATTAACTGGACATCTCTGGAATATAGCAAGGATGTGGTTCCTCAAAAGATAAACGTGCCTACAATTCAATCTGAAAGGCCTGCATATCCATCATCAAAGTCGAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAGTGCAGACGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCAAGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAATATTGA 1128 0.4043 MAQEIENKAKEAFFDDDFSLAVDLYSQAIDLDPNNPNLFADRAQAYIKLNSFTEAVSDANKAILLNPTLSKAYLRKGTACFNLEEYHTAKVALEKGVSFAPNDSRFTNLIQQCERHIAAEESDSLVGILPPNGTKTSVPPVAADTHMCDKSDGTSKEPQRDIPASQTNEAAPTRPKYRHEYYQKPEEVVVTIFAKGIPAENVAVEFGEQILSVTINVPGQDAYQYQPRLFGKITPDKCKVVVLSTKIEIRLAKAEAINWTSLEYSKDVVPQKINVPTIQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQSADEDMRRAMSKSFQESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00340 375 MobiDBLite consensus disorder prediction 158 172 - -
Trre9g00340 375 FunFam Protein SGT1 homolog 1 127 - -
Trre9g00340 375 Pfam Tetratricopeptide repeat 17 56 - -
Trre9g00340 375 CDD p23_CS_SGT1_like 180 263 - -
Trre9g00340 375 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Trre9g00340 375 Pfam SGS domain 293 373 IPR007699 -
Trre9g00340 375 ProSiteProfiles SGS domain profile. 284 375 IPR007699 -
Trre9g00340 375 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre9g00340 375 SMART tpr_5 70 103 IPR019734 GO:0005515
Trre9g00340 375 SMART tpr_5 36 69 IPR019734 GO:0005515
Trre9g00340 375 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Trre9g00340 375 MobiDBLite consensus disorder prediction 131 178 - -
Trre9g00340 375 SUPERFAMILY HSP20-like chaperones 168 271 IPR008978 -
Trre9g00340 375 PANTHER PROTEIN SGT1 HOMOLOG 1 373 IPR044563 GO:0051087
Trre9g00340 375 Gene3D - 175 266 IPR008978 -
Trre9g00340 375 Pfam CS domain 178 253 IPR007052 -
Trre9g00340 375 ProSiteProfiles CS domain profile. 174 263 IPR007052 -
Trre9g00340 375 MobiDBLite consensus disorder prediction 355 375 - -
Trre9g00340 375 FunFam Protein SGT1 homolog A 172 276 - -
Trre9g00340 375 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Trre9g00340 375 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Trre9g00340 375 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00340 Trre-Chr9 2443915 2447931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00340 1 100 U-box Gene Family AT3G07370 28.000 8.07e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00340 K12795 - gmx:100784022 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00340 9 2443915 2447931 Trre9g00340 9 2443915 2447931 ECH