Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00335 ATGGAACAGAAAGGAATGCTGATATCTGCCTGCGTTGGGGTCGGAGTTGGAGTCGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGGCCTAATGCTGTCTCCTCAAACGCCATCACACCCGAAAAAATTGAACACGAAATGCTTCGACTTATTGTTGATGGCAGAGAAAGCAATGTCACTTTTGATAATTTCCCTTATTATCTTAGTGAACAGACACGGGTGTTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCGGAGGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAACTTTACCAACAGGTTCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCTAAGTTGCTTCTGTTTGATGTAACCGACTTTTCATTGAAGATTCAAAGTAGATATGGTTCATCCAACATAGAAAATTCTTTAAAAAGGTCTACTTCAGAGACAACCTTGGCTCGGTTATCTGACCTATTCGGGTCATTTTCCTTCTTTCCGCAAAGAGAAGATAATAAAGGCAAAATCCGCAGGCAAAGCAGTGGCGTAGACCTTCGACGGATGGAGGCTGAAGGATCTAGTAATCCTTCTAAGCTTCGTAGGAATGCATCAGCCTCTGGAAATATGAGCAGTCTTGGTTTGCAAAGCAATCCTACAAACTCAGCTTCTGGGAAGCACATAGTCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGACTATTTACAAGGTTTTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATATCTGCGGGATGTTGATAAGTTGTTGGGTAGATCACAAAGGATATGTAAACTGTTCCAGACAATGTTAACAAAATTATCTGGACAAATTTTGATTCTTGGTTCAAGGGTTGTGGATTCTAGTAATGACTGCAATGAAGTAGATGATATGCTTACCTCCCTCTTCCCTTACGACATAGAAATCAAACCACCGGAAGATGAATCCCATCTGGTCAGCTGGAAGTCTCAATTTGAAGCGGATATGAAGAAGATACAGATTCAAGACAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCCGTGTAGAAGACGCAATGGTTCTCAGTAACTCTATAGAAGAGGTTGTCGTATCAGCGATTTCTTATCATTTAATGAATAGCAAAGAGCCTGAATACAGAAATGGGAAACTGGTTATTCCGTGCAATAGTTTGTCCCATGCTCTGGGTATATTCCAGGAGGGAAAACTCAGTGGAAGAGATACAATGAAATTAGAAGCTCAAGCAGTAACAGCTGAGAGAGAAGAAGGAGCTGTTGTGAAACCAGAAGGAAAGTCTGAAAGTTCTGCTCCTGGTATAAAGACTGAAGCAGAAATACCAACTTCGGCGGCCAGAACTGACGGTGAAAATTCAGTTCCTGCCCCCAAAGCTGAAGTTCCTGACAATGAGTTTGAGAAGCGAATAAGGCCTGAAGTAATACCAGCAAACGAAATTGGGGTAACATTCTCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCGGACCTTTTTGATGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCACCTGGCACAGGAAAAACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGACGAGAAGAATGTTCGTGCTTTATTCACACTGGCAGCCAAAGTCTCCCCAACTATTATATTTGTTGATGAGGTGGACAGTATGCTTGGCCAGCGGACAAGAGTTGGGGAACATGAAGCCATGCGTAAAATAAAGAATGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCATCGGACCGCATCCTTGTCCTCGCTGCAACCAATAGGCCCTTTGACCTGGATGAAGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGGGCTACCATCTGCGGAGAACCGGGAAAATATATTGAGGACCCTTTTGGCTAAAGAGAAGGTGGACGATGGACTTGATTTTAAGGAACTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTAAAGAACATATGCACAACTGCTGCTTATAGGCCTGTTAGAGAGTTAATTCAGCAAGAGATAAAAAAGGATTCGGAGAAAAAGAAGAAAGAAGCTGAAGGACAAGATGCTCAGGATGTAGAAGAAGTTGAACAGGAAAGAGTCATTAGCCTTAGACCTTTGAATATGCAGGACTTCAAAGTGGCAAAGAGTCAGGTTGCCGCAAGCTTTGCATCCGAGGGGGCTGGAATGAATGAGTTGAAGCAGTGGAATGACTTGTATGGCGAAGGTGGTTCGAGGAAGAAAGAACAACTATCTTATTTCCTATGA 2484 0.4287 MEQKGMLISACVGVGVGVGLGLASGQTKWGPNAVSSNAITPEKIEHEMLRLIVDGRESNVTFDNFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKIQSRYGSSNIENSLKRSTSETTLARLSDLFGSFSFFPQREDNKGKIRRQSSGVDLRRMEAEGSSNPSKLRRNASASGNMSSLGLQSNPTNSASGKHIVSWSFDEKLLIQTIYKVLVYVSKTYPIVLYLRDVDKLLGRSQRICKLFQTMLTKLSGQILILGSRVVDSSNDCNEVDDMLTSLFPYDIEIKPPEDESHLVSWKSQFEADMKKIQIQDNKNHIMEVLAANDLDCHDLDSIRVEDAMVLSNSIEEVVVSAISYHLMNSKEPEYRNGKLVIPCNSLSHALGIFQEGKLSGRDTMKLEAQAVTAEREEGAVVKPEGKSESSAPGIKTEAEIPTSAARTDGENSVPAPKAEVPDNEFEKRIRPEVIPANEIGVTFSDIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRENILRTLLAKEKVDDGLDFKELATMTEGYSGSDLKNICTTAAYRPVRELIQQEIKKDSEKKKKEAEGQDAQDVEEVEQERVISLRPLNMQDFKVAKSQVAASFASEGAGMNELKQWNDLYGEGGSRKKEQLSYFL 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00335 827 Pfam AAA+ lid domain 709 750 IPR041569 -
Trre9g00335 827 Gene3D - 687 789 - -
Trre9g00335 827 MobiDBLite consensus disorder prediction 182 230 - -
Trre9g00335 827 Pfam ATPase family associated with various cellular activities (AAA) 555 685 IPR003959 GO:0005524|GO:0016887
Trre9g00335 827 SMART AAA_5 551 688 IPR003593 GO:0016887
Trre9g00335 827 SMART AAA_5 100 331 IPR003593 GO:0016887
Trre9g00335 827 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 514 689 - -
Trre9g00335 827 MobiDBLite consensus disorder prediction 747 769 - -
Trre9g00335 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 754 IPR027417 -
Trre9g00335 827 MobiDBLite consensus disorder prediction 449 497 - -
Trre9g00335 827 ProSitePatterns AAA-protein family signature. 658 677 IPR003960 GO:0005524|GO:0016887
Trre9g00335 827 Gene3D - 514 796 IPR027417 -
Trre9g00335 827 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 826 - -
Trre9g00335 827 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00335 Trre-Chr9 2399668 2405591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00335 515 745 Calmodulin-binding Proteins AT3G56690 38.462 8.09e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00335 - - gmx:100808011 1275