Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00332 ATGGGTAATCGCATCAGTTCCAAATTCTCTTCCAATAACCAAACCCATTCAAAACAACAACAACAACAACAACAAACTCAACATTCAAAATCAGAACCCTCACATCCCACTCCATCTTCCGTCCACAATCAACCTTTCCATTCCTCCTCCCACAACTCCGCCGCCGCCGTCGGCCGTGTCTTAGGCAAACCCATGGAAGACGTCCGATCTACCTATACCTTCGGCCGTGAACTAGGTCGTGGTCAATTTGGAGTCACATATCTAGTAACTCACAAAATCACCAAAGAACAATTCGCCTGCAAATCGATCGCGACGAGGAAGCTTATTCGTCGCGATGATTTGGATGATATTCGCCGTGAAGTTCAGATCATGCACCATCTCACCGGTCACCGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCAGTTAATCTCATCATGGAGCTTTGTGCTGGTGGTGAACTCTTTGATCGGATTATATCTAAAGGTCATTACTCTGAGCGTGCTGCTGCTGAATTGTGTCGCCAGATGGTAGCTGTTGTTCATAATTGTCACACTATGGGTGTTATGCATAGGGATTTGAAGCCGGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAACCACCGATTTTGGTCTCTCGGTGTTTTTCAAGCCAGGAGATGTATTTAAAGATCTTGTTGGAAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGATTATTTTGTATATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAATGAAAAGGGTATCTTTGATGCTATTCTTCATGGACATATTGATTTCGCATCTGATCCCTGGCCTAAAATATCAAGTAGTGCTAAAGATCTGATCAAGAAGATGTTGCAAGGTGACCCTAAAGAACGGATTTCGGCTGTTGAAGTTCTTAATCATCCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCTGTTTTGACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCCGAAGAAGAAATTATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCCAAACTAGGTACTAAGATTTCTGAGTCTGAAGTAAGGCAGCTGATGGAAGCGGCTGATGTTGATGGAAATGGAACCATTGATTATATCGAGTTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTGTTCAAAGCTTTTGAATATTTTGACAAGGACAAAAGCGGGTACATTACAAAGGAAGAGTTGGAATCTGCCCTTACAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATTCAGACAATGATGGAAGAATTAACTATGAAGAGTTTGTAGCCATGATGAGGAGTGGCAACCCAGACTTGATAGCCAACAAGCGTCGCAAATAA 1569 0.4213 MGNRISSKFSSNNQTHSKQQQQQQQTQHSKSEPSHPTPSSVHNQPFHSSSHNSAAAVGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKITKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQMVAVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKTTDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEKGIFDAILHGHIDFASDPWPKISSSAKDLIKKMLQGDPKERISAVEVLNHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLFKAFEYFDKDKSGYITKEELESALTKYNMGDEKTIKEIIAEVDSDNDGRINYEEFVAMMRSGNPDLIANKRRK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00332 522 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Trre9g00332 522 FunFam Calcium-dependent protein kinase 1 74 157 - -
Trre9g00332 522 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Trre9g00332 522 SUPERFAMILY EF-hand 368 508 IPR011992 -
Trre9g00332 522 Gene3D - 338 511 - -
Trre9g00332 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Trre9g00332 522 MobiDBLite consensus disorder prediction 1 53 - -
Trre9g00332 522 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Trre9g00332 522 CDD STKc_CAMK 72 329 - -
Trre9g00332 522 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Trre9g00332 522 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Trre9g00332 522 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Trre9g00332 522 FunFam calcium-dependent protein kinase 1 158 337 - -
Trre9g00332 522 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Trre9g00332 522 Pfam EF-hand domain pair 447 509 IPR002048 GO:0005509
Trre9g00332 522 Pfam EF-hand domain pair 377 437 IPR002048 GO:0005509
Trre9g00332 522 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00332 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 504 - -
Trre9g00332 522 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00332 522 FunFam Calcium-dependent protein kinase 1 337 512 - -
Trre9g00332 522 Gene3D Transferase(Phosphotransferase) domain 1 158 337 - -
Trre9g00332 522 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00332 522 SUPERFAMILY Protein kinase-like (PK-like) 69 340 IPR011009 -
Trre9g00332 522 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Trre9g00332 522 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Trre9g00332 522 SMART efh_1 412 440 IPR002048 GO:0005509
Trre9g00332 522 SMART efh_1 448 476 IPR002048 GO:0005509
Trre9g00332 522 SMART efh_1 376 404 IPR002048 GO:0005509
Trre9g00332 522 SMART efh_1 483 511 IPR002048 GO:0005509
Trre9g00332 522 ProSiteProfiles EF-hand calcium-binding domain profile. 480 514 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00332 Trre-Chr9 2393719 2397977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00332 58 521 EF-hand Containing Proteins AT4G23650 80.000 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g00332 Pkinase 6.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00332 K13412 - gmx:100817321 866.3