Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00320 ATGACCAAGAAACACATTCACCGACTCAACCTTACCAAAGAAAACACACCAAAGGAACCATTTCCGAAAATAGTCAGAATAACTGTAACTGACAAAGACGCTACAGATTGTTCCAGTGATGAAGAAGAATGTTTCAAGCATAACCGACCTAAGAAGTTTGTTAACGAGATTATCATAGAGCCATGCGTGAGTGAGAGTAAAAGCCGCGGCGGCGGTGGTGGAGGTAGTGCTGGTGGTGTTTCTAGGAAGAGAAACAGGACAAACGGAGGAGGAAAAACAAAAGCTCCGGCGAGTCGACAGGTTTACTCAGGGAAGAAATACAGAGGAGTTAGACAGCGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGTCGCGTGGTGTGCGCGTGTGGCTTGGCACGTTTGAAACGGCTGAAGAAGCTGCTATTGTGTACGATAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTTATAACTCCACCCTCCACGTGTCAGTTATCATTACCGGATAATCATCAAAAACCTCCTCAGCAGTTACCGTTACCGGTAACAAACTCCGGTTGCATTTCCGGCGAAGAATCACAATCTCAATCTCAATCTCAATCTCATTCTCAAAACAACAATAAGAGTTTGTTTTCTCCTAAATCAGTTCTTCATTGTTGTTCATCTTCAGAAGAAGTAGCTGAATCTGAGTCAAGGTTTTCAATTCCAAATGATATATTATTCGATTTTCAAGATTCTTCACCGGCAAATGGTGCATTTAGCAGCTTCAACACCTTACCGGAGAGTATCTTCTACGCCGATATTGATTGTTCGGAGTATTTCGATTTCGGTTTGGAAAGTTTGCATACACATAAGGATGATGATTTTTTTCAAGATATTGATGATTTGTTTACTTCAGATGCTCTTCTTGCTCTTTAA 936 0.4284 MTKKHIHRLNLTKENTPKEPFPKIVRITVTDKDATDCSSDEEECFKHNRPKKFVNEIIIEPCVSESKSRGGGGGGSAGGVSRKRNRTNGGGKTKAPASRQVYSGKKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFETAEEAAIVYDNAAIKLRGPDALTNFITPPSTCQLSLPDNHQKPPQQLPLPVTNSGCISGEESQSQSQSQSHSQNNNKSLFSPKSVLHCCSSSEEVAESESRFSIPNDILFDFQDSSPANGAFSSFNTLPESIFYADIDCSEYFDFGLESLHTHKDDDFFQDIDDLFTSDALLAL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00320 311 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Trre9g00320 311 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Trre9g00320 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 227 - -
Trre9g00320 311 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 MobiDBLite consensus disorder prediction 64 106 - -
Trre9g00320 311 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Trre9g00320 311 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Trre9g00320 311 MobiDBLite consensus disorder prediction 171 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00320 Trre-Chr9 2286538 2287473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00320 23 224 AP2-EREBP Transcription Factor Family AT4G27950 47.291 2.65e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre9g00320 AP2 9.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00320 - - mtr:11438409 377.096