Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00307 ATGGAAGAACGTCCCCAAAATAAGCCAAAGATCTCCTCAAACTCAAGTAAAACTACTACTTCTGAAGAAGTGAGCAGCAGTGAGTGGGATTTCATAGAGATGAGCGAACAAGAGGAGGATCTCATTTACAGGATGTACGGCCTAGTTGGAGATAGGTGGAATTTGATAGCCGGTCGCATTCCTGGCCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGTGATGCTTTTTCTGCCAAAAGAAGTGAACGTAAAGCAAATTAA 273 0.4249 MEERPQNKPKISSNSSKTTTSEEVSSSEWDFIEMSEQEEDLIYRMYGLVGDRWNLIAGRIPGRKAEEIERFWIMRHGDAFSAKRSERKAN 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00307 90 MobiDBLite consensus disorder prediction 8 30 - -
Trre9g00307 90 SMART sant 30 78 IPR001005 -
Trre9g00307 90 Pfam Myb-like DNA-binding domain 34 73 IPR001005 -
Trre9g00307 90 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 33 75 - -
Trre9g00307 90 Gene3D - 34 75 - -
Trre9g00307 90 CDD SANT 33 72 IPR001005 -
Trre9g00307 90 SUPERFAMILY Homeodomain-like 35 73 IPR009057 -
Trre9g00307 90 MobiDBLite consensus disorder prediction 1 30 - -
Trre9g00307 90 FunFam MYB-like transcription factor 33 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00307 Trre-Chr9 2203514 2206037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00307 34 72 MYB Transcription Factor Family AT5G52600 58.974 2.61e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g00307 Myb_DNA-binding 7.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00307 K09422 - twl:119981384 127.487