Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00305 ATGGACGGAAAACAAATCAGAACAAACACACAACAATTCCAAGATAGAGGCGATATTGGATCGTCTTTATCAAATCTTATTTTATCGAGCGGTACAAACACGCTCGATTCAATTTTCTCGGATATTCCCTCAACAAACACCTCCATCACCGCAACCAACTCCTTAGGTTCTTCGAATTTTGAACCTTTAGGTTCCTCTGTCTATCTTCGACAAAGAGACATCCTTCAAAAATTCTACGAAGAAACTCGATCAACGAGTTCCTTCCTTCCATCTTCATTTTCAAATCAATCACTAAACCCGTCTTTATACTCAACAATATCGAATTCAAATTCGTTCACTTCTTTGTTGAACCCTTTGGATTTGAAGAAAAAGTTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCTGAAATTCGACTTCCTCAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTAGAGGTGAATATGCACGTTTGAATTTTCCGAATTTGAAAGATCCAACTAAGTTGGGTTTTGGTGATTCTACTAAATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGTCAAAAGGTGAAAAGAGAAAAAGCTAAAAAAATTGCTGCTAAGAAGATGAAGAAGAAGAATTTAGAGAGTGATAGTAAGAAAGAGGATGCAGAGAAGATTAATTTGTCTTCTTGTTCTTCTTCTTCGTCTTCATTACCTTTGTCGCCGTCGGTTTTTTATGAAGATTGGATGAATGAATTGTTTTCGCCAACTGTTTCCGAAGATGGAGTTTGGAAAGGGGAGAATTCGCCGAATTCTGTTTCGACAATGGTGACAGAAGAGACAGAGTTTGAAGATTGTTCCTTAGCCTTAGCAAGGATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG 984 0.378 MDGKQIRTNTQQFQDRGDIGSSLSNLILSSGTNTLDSIFSDIPSTNTSITATNSLGSSNFEPLGSSVYLRQRDILQKFYEETRSTSSFLPSSFSNQSLNPSLYSTISNSNSFTSLLNPLDLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKKNLESDSKKEDAEKINLSSCSSSSSSLPLSPSVFYEDWMNELFSPTVSEDGVWKGENSPNSVSTMVTEETEFEDCSLALARMPSFDPELIWEVLAV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00305 327 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Trre9g00305 327 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Trre9g00305 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 325 - -
Trre9g00305 327 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Trre9g00305 327 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Trre9g00305 327 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Trre9g00305 327 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Trre9g00305 327 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
Trre9g00305 327 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Trre9g00305 327 Coils Coil 217 237 - -
Trre9g00305 327 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00305 Trre-Chr9 2195596 2196579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00305 18 326 AP2-EREBP Transcription Factor Family AT1G64380 47.507 2.11e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre9g00305 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00305 - - psat:127120808 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00305 9 2195596 2196579 Trre9g00305 9 2195596 2196579 ECH