Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00304 ATGGATCATGCTAATAATATTGTAACCGACAATATTACTAAATCAAAAGAAATTGAACGACGTTATAATGATTATAGAAAGAAAAGAAAGCGTCCATGTAAAGTGGCGGTGATTCCGACGATGGAAACAACCACCGGAGACACCGCCACGGCGTCACATGGTTTTATATCGGTTATTGGACGGAGGAGAGTGATGGAAGATGCTATTAAGGTGATTCCACGTTTTGTGGCAGCGGAAAAGCAACCGTGTGGTTATGATTTCTTTGCTGTTTATGATGGTCACGGTGGTATGACGGTGGCTAATGCTTGTCGTGATAGGTTGCATGTTTTGTTGGCGGAGGAAGTGAAGGAAGGAAGAAGGAATCATGGGTTTGATTGGTGTAAGGCTATGTGTGAATGTTTTATGAAGATGGATAGGGAAATTGGTGTTGGTGGTGGTGATGTTGATGGGAATACGGTGGGTTCTACGGCGGCTGTTGTGGTGGTTGGGAAGGAGGAGATAGTGGTTGCGAATTGTGGTGATTCTAGGGCCGTGTTGTGTAGTGGCGGTGTAGCGGTTCCACTTTCACGTGATCATAAGCCAGATCTTCCTGATGAAAGAGAGAGAATTGAAGCAGCAGGTGGAAGAGTGATTAATTGGAATGGGAGTCGAGTTTTAGGAGTTCTTGCTACTTCTAGATCTATCGGGGATCACTGCATGAAGCCATTTGTGATATCTCAACCTGAGATAAACGTGTATGGAAGAACAAAATCAGATGAATTTGTTGTAGTAGCAAGTGATGGTCTTTGGGATGTAGTTTCAAACAATTTTGTTTGTGAAGTTGTAAGAAGTTGTCTCCAAGGTCATATGAGGATGAGGCATAATAATAATAATCATATAAAAGAAGATCATCATACTATTAAAAGTTATGCAGCTGAAGCTGCAGCAATCTTAGCTGAATTGGCTATGGCTAAGGGAAGCAAAGACAACATTAGTGTTATAGTCATTCAGCTCAACACTAACATTTGA 1008 0.4167 MDHANNIVTDNITKSKEIERRYNDYRKKRKRPCKVAVIPTMETTTGDTATASHGFISVIGRRRVMEDAIKVIPRFVAAEKQPCGYDFFAVYDGHGGMTVANACRDRLHVLLAEEVKEGRRNHGFDWCKAMCECFMKMDREIGVGGGDVDGNTVGSTAAVVVVGKEEIVVANCGDSRAVLCSGGVAVPLSRDHKPDLPDERERIEAAGGRVINWNGSRVLGVLATSRSIGDHCMKPFVISQPEINVYGRTKSDEFVVVASDGLWDVVSNNFVCEVVRSCLQGHMRMRHNNNNHIKEDHHTIKSYAAEAAAILAELAMAKGSKDNISVIVIQLNTNI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00304 335 SMART PP2C_4 42 329 IPR001932 -
Trre9g00304 335 SUPERFAMILY PP2C-like 48 332 IPR036457 -
Trre9g00304 335 Gene3D - 47 334 IPR036457 -
Trre9g00304 335 PANTHER PROTEIN PHOSPHATASE 34 330 IPR015655 GO:0004722|GO:0006470
Trre9g00304 335 FunFam Protein phosphatase 2C 51 45 335 - -
Trre9g00304 335 CDD PP2Cc 52 331 IPR001932 -
Trre9g00304 335 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Trre9g00304 335 Pfam Protein phosphatase 2C 53 324 IPR001932 -
Trre9g00304 335 ProSiteProfiles PPM-type phosphatase domain profile. 52 331 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00304 Trre-Chr9 2165612 2168077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00304 35 331 PP2C-type Phosphatase Gene Family AT1G07430 44.179 4.99e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00304 K14497 - gmx:100813248 430.254