Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00295 ATGTCTACCTTGAAAATTTCTTTCATATTTTCCATACTTCTCTTACTTTTTCACTCAACAAAAAGCACACCTCCAACTTGTGACAAGAGATATTGTGGAAACCCAGATATAGGATTGAAGTTCCCATTCCAATTTAGAGAAGAAAATCAAATTAACAATGATCGATGTGGGTACCAAGGATTTGAAGTATATTGCAAAAATAAGAATCAAACTTTGCTTACACTCTCAAATTCAACATTTATTGTCAAATATATTTCCTATGAGAGTCAAAAAATTTGGATCAGTCCCATAGAGTGTCCACCAAAACGGTTCCTTCAAAACATAAACCTCCACAATTCACCTTTCTCATTGGACAAGCCTCACGTGAATGAAATTTATGAAAATGTAACATTTCTCAATTGTACAAATTTTGCAAAGGACCCAATAGTTAATGATCTTCCTACTATACCTTGTCTAAGCAATGACAAGTATTCAATCATGTATACATTAGCATCAACTCCTAATAATTTGTGGAATCAATCATGTCATGAGATTGGTTTTGCTATGGTTCGAGTCCAAGATTCTTCTGGTAAAAAAAATGAAATCTGGGATGGACTTCGCTCTGATATATTGTTGCGGTGGAATACACCTTTTTGTTATTGTGAAGCTGATCAATTTTGCGGTTTTTCAAATGATACGAGTCTTGATGTTACTTGTTACGATACCAGCTACTATTATGTTCGCGAAGGTGAAAAGCCTAAAAATAACTACTTTTTTCCAGTAGTATGGGGAGTATCTGCATTTTTCTTCTTCATATGGGTATCTTTATCCGTATATAAAAATAGAATGGCGCAAAACAATAGCCAACAAGGAGAAACAATTACAAACGTAGAACAAAGTAATCGAGAACCACCTTGGTTTGTGTTTGGACTTGATAATTCAAGAATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAGTCCATTGATAATGTTTGTTCCATATGTCTTAGTGAGTACAAACCAATGGAGACATTAAGGAGTATACCACAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGTCCTTTATGTCGAAATTTGCCGGAGTGA 1134 0.3448 MSTLKISFIFSILLLLFHSTKSTPPTCDKRYCGNPDIGLKFPFQFREENQINNDRCGYQGFEVYCKNKNQTLLTLSNSTFIVKYISYESQKIWISPIECPPKRFLQNINLHNSPFSLDKPHVNEIYENVTFLNCTNFAKDPIVNDLPTIPCLSNDKYSIMYTLASTPNNLWNQSCHEIGFAMVRVQDSSGKKNEIWDGLRSDILLRWNTPFCYCEADQFCGFSNDTSLDVTCYDTSYYYVREGEKPKNNYFFPVVWGVSAFFFFIWVSLSVYKNRMAQNNSQQGETITNVEQSNREPPWFVFGLDNSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00295 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 376 IPR013083 -
Trre9g00295 377 SMART ring_2 331 372 IPR001841 -
Trre9g00295 377 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Trre9g00295 377 SUPERFAMILY RING/U-box 330 374 - -
Trre9g00295 377 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Trre9g00295 377 Pfam Ring finger domain 330 373 IPR001841 -
Trre9g00295 377 CDD RING-H2_EL5-like 331 373 - -
Trre9g00295 377 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 376 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00295 Trre-Chr9 2092305 2093808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00295 22 376 C3H Transcription Factor Family AT2G46495 34.435 9.08e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00295 - - psat:127123903 449.129