Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00279 ATGGTTGCCGCCACCGCTATCTCAACCGTCGTCACCGATGTCAATCTTCACACCAGATTTCATTCCTCTTTTTCTTCTACGCCATTCACTCTCCCACTCTCTCCTCACTTTTCTTCTCACCCCAAACATTTTTCTTCTATCAGATGCCAATCGGTTAATACTGATAAGAAGAAAAGTAGTAGAAATGTGTTTGACAACGCGAGTAACCTCTTAACGAGCTTGTTAAGTGGTGGAAGTTTAGGTTCTATGCCTATAGCTGAAGGTGCTGTCACCGATCTCTTTGATCGACCGCTGTTTTTCTCGCTGTATGATTGGTTCATAGAGCATGGCTCTGTGTATAAACTTGCGTTTGGGCCGAAAGCATTTGTGGTTGTATCAGATCCCATTGTTGCAAGACATATTCTGCGAGAAAATGCCTTTTCTTATGACAAGGGAGTACTCGCTGATATCCTAGAGCCAATTATGGGAAAAGGACTAATACCTGCAGACCTTGAGACATGGAAGCAAAGGAGAAGAGTGATTGCTCCGGGTTTCCATACCTCATACTTGGAAGCTATGGTAAAACTATTCACTTCCTGTTCAGAAAGAACAGTATTGAAGTTCAATGAGCTTCTTGAAGGAGAGGGGCATGATGGACAGAAGTCAATTGAATTGGACCTTGAGGCAGAATTTTCAAATTTGGCTCTTGATATTATTGGGCTAGGTGTGTTCAACTATGACTTTGGTTCTGTTACCAATGAATCTCCCGTTATTAAGGCTGTCTATGGCACTCTTTTTGAAGCTGAACATAGATCCACTTTCTATATTCCATATTGGAAACTTCCATTAGCAAGTTGGATAGTACCTAGACAAAGGAAGTTTCAGGAAGACCTTAAGGTCATTAATACTTGTCTTGACGGACTTATCAGAAATGCAAAAGAGAGCAGGGAGGAAACAGATGTTGAGAAACTGCAGCAAAGGGATTACTCAAATTTGAAGGATGCAAGTCTACTGCGTTTCCTAGTTGATATGCGGGGAGTTGATGTTGATGATCGTCAGTTGAGGGATGATTTAATGACAATGCTTATTGCTGGTCATGAGACGACGGCTGCAGTTCTTACATGGGCAGTTTTCCTGCTAGCTCAAAGTCCTGACAAAATGAAGAAGGCTCAAGCAGAGGTAGATTCGGTGCTGGGTACAGGGAAGCCAACTTTTGAATCGCTTAAAAAGTTGCAGTACATCAGGTTAATTGTTGTGGAGGCTCTTCGATTATATCCACAACCACCTCTGCTGATTAGACGTTCACTCAAATCTGATGTTTTACCAGGGGGTTATAAAGGTGACAAAGATGGTTATACAATTCCTGCTGGGACTGATGTCTTCATTTCTGTATATAATCTCCACCGATCTCCATATTTTTGGGACCGTCCTAATGACTTCGAGCCTGAGAGATTTCTAGTAGAAAACAAGAATGAAGAAATCGAAGGGTGGGCTGGTTTTGACCCATCTCGAAGTCCTGGAGCCTTGTATCCAAACGAGGTTATATCGGATTTTGCCTTCTTGCCTTTTGGTGGTGGACCTCGAAAATGTGTTGGGGACCAATTTGCTCTCATGGAGTCCACTGTAGCACTGACTATGCTACTACAGAATTTCGACGTGGAATTGAAGGGGACCCCTGAATCGGTCGAACTAGTTACCGGGGCAACTATCCATACCAAAAATGGATTGTGGTGCAATTTGAGGAAGAGATCTTCTGTACAATGA 1743 0.4274 MVAATAISTVVTDVNLHTRFHSSFSSTPFTLPLSPHFSSHPKHFSSIRCQSVNTDKKKSSRNVFDNASNLLTSLLSGGSLGSMPIAEGAVTDLFDRPLFFSLYDWFIEHGSVYKLAFGPKAFVVVSDPIVARHILRENAFSYDKGVLADILEPIMGKGLIPADLETWKQRRRVIAPGFHTSYLEAMVKLFTSCSERTVLKFNELLEGEGHDGQKSIELDLEAEFSNLALDIIGLGVFNYDFGSVTNESPVIKAVYGTLFEAEHRSTFYIPYWKLPLASWIVPRQRKFQEDLKVINTCLDGLIRNAKESREETDVEKLQQRDYSNLKDASLLRFLVDMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQSPDKMKKAQAEVDSVLGTGKPTFESLKKLQYIRLIVVEALRLYPQPPLLIRRSLKSDVLPGGYKGDKDGYTIPAGTDVFISVYNLHRSPYFWDRPNDFEPERFLVENKNEEIEGWAGFDPSRSPGALYPNEVISDFAFLPFGGGPRKCVGDQFALMESTVALTMLLQNFDVELKGTPESVELVTGATIHTKNGLWCNLRKRSSVQ 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00279 580 Pfam Cytochrome P450 106 570 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS P450 superfamily signature 514 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS P450 superfamily signature 523 534 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS P450 superfamily signature 357 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS P450 superfamily signature 409 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PANTHER CYTOCHROME P450 FAMILY 4 109 576 - -
Trre9g00279 580 SUPERFAMILY Cytochrome P450 93 576 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS E-class P450 group I signature 366 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS E-class P450 group I signature 513 523 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS E-class P450 group I signature 523 546 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS E-class P450 group I signature 106 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 PRINTS E-class P450 group I signature 346 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 Gene3D Cytochrome P450 82 580 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre9g00279 580 CDD CYP97 100 570 - -
Trre9g00279 580 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 516 525 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00279 Trre-Chr9 1987458 1993609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00279 46 577 Cytochrome P450 AT4G15110 78.049 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00279 K24543 - gmx:606504 1007.67