Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00273 ATGTCTGGAACACTACACTTTGGTAATGGTGTTACTGGAGAGAACAGAAGGCAAAAGCGCAAGATGGATGAAAGAGTTGCCGCCGATTCCAATGTGTCATTGTCTTTGAGTATAGGAGGTGGAAGAGGAGGGGGATCTTCATTCAATTCCCTTCAGATCCATGAGGAGCAGAGGAAATACCCGTGTAAGTTTTGCACTAAGACGTTTTCAAGTCCTCAAGCCTTAGGAGGACACCAAAACGCCCACCGGCGTGAAAGGGTGCTTTCAAGAATGGACACAGAAATTCAAATGGGAATTTTTGGACTTGGTCATCATTTGTATCCATGCTCAAATCCTCCTTATTATCAGCAACATCCCTTCAATGCTGCAAGGACTATGCCTTTTTATCATGGAATTGGATGGCCTCATCTTGTTGCACCCACTGGCTATGGCAATCCATTTGGGATGATCAACAACTCTGGGGCCACTCAAACTCCACTGAACAATAATATGAGATTTGAAAATTATGGACGTAATAATCAGCTGCAGGTTCCTTCATTTGGTGCTACTCATAACAATTATTTTCTAATGGAAAATAACAATCACAATGCCTAG 594 0.4259 MSGTLHFGNGVTGENRRQKRKMDERVAADSNVSLSLSIGGGRGGGSSFNSLQIHEEQRKYPCKFCTKTFSSPQALGGHQNAHRRERVLSRMDTEIQMGIFGLGHHLYPCSNPPYYQQHPFNAARTMPFYHGIGWPHLVAPTGYGNPFGMINNSGATQTPLNNNMRFENYGRNNQLQVPSFGATHNNYFLMENNNHNA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00273 197 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre9g00273 197 MobiDBLite consensus disorder prediction 13 27 - -
Trre9g00273 197 Pfam C2H2-type zinc finger 60 85 - -
Trre9g00273 197 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Trre9g00273 197 Gene3D Classic Zinc Finger 46 97 - -
Trre9g00273 197 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 52 191 IPR044246 GO:0009788
Trre9g00273 197 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g00273 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00273 Trre-Chr9 1955181 1955774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00273 18 153 C2H2 Transcription Factor Family AT5G25160 34.307 1.93e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g00273 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00273 - - tpra:123904723 280.411