Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00273 | ATGTCTGGAACACTACACTTTGGTAATGGTGTTACTGGAGAGAACAGAAGGCAAAAGCGCAAGATGGATGAAAGAGTTGCCGCCGATTCCAATGTGTCATTGTCTTTGAGTATAGGAGGTGGAAGAGGAGGGGGATCTTCATTCAATTCCCTTCAGATCCATGAGGAGCAGAGGAAATACCCGTGTAAGTTTTGCACTAAGACGTTTTCAAGTCCTCAAGCCTTAGGAGGACACCAAAACGCCCACCGGCGTGAAAGGGTGCTTTCAAGAATGGACACAGAAATTCAAATGGGAATTTTTGGACTTGGTCATCATTTGTATCCATGCTCAAATCCTCCTTATTATCAGCAACATCCCTTCAATGCTGCAAGGACTATGCCTTTTTATCATGGAATTGGATGGCCTCATCTTGTTGCACCCACTGGCTATGGCAATCCATTTGGGATGATCAACAACTCTGGGGCCACTCAAACTCCACTGAACAATAATATGAGATTTGAAAATTATGGACGTAATAATCAGCTGCAGGTTCCTTCATTTGGTGCTACTCATAACAATTATTTTCTAATGGAAAATAACAATCACAATGCCTAG | 594 | 0.4259 | MSGTLHFGNGVTGENRRQKRKMDERVAADSNVSLSLSIGGGRGGGSSFNSLQIHEEQRKYPCKFCTKTFSSPQALGGHQNAHRRERVLSRMDTEIQMGIFGLGHHLYPCSNPPYYQQHPFNAARTMPFYHGIGWPHLVAPTGYGNPFGMINNSGATQTPLNNNMRFENYGRNNQLQVPSFGATHNNYFLMENNNHNA | 197 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00273 | 197 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 82 | IPR013087 | - | |
Trre9g00273 | 197 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
Trre9g00273 | 197 | Pfam | C2H2-type zinc finger | 60 | 85 | - | - | |
Trre9g00273 | 197 | SUPERFAMILY | beta-beta-alpha zinc fingers | 57 | 87 | IPR036236 | - | |
Trre9g00273 | 197 | Gene3D | Classic Zinc Finger | 46 | 97 | - | - | |
Trre9g00273 | 197 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 52 | 191 | IPR044246 | GO:0009788 | |
Trre9g00273 | 197 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Trre9g00273 | 197 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 60 | 87 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00273 | Trre-Chr9 | 1955181 | 1955774 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00273 | 18 | 153 | C2H2 Transcription Factor Family | AT5G25160 | 34.307 | 1.93e-11 | 59.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre9g00273 | zf-C2H2_6 | 2e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00273 | - | - | tpra:123904723 | 280.411 |