Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00272 ATGTCTGGAACACTACACTTTGGTAATGGTGTTACTGGAGAGAACAGAAGGCAAAAGCGCAAGATGGATGAAAGAGTTGCCGCCGATTCCAATGTGTCATTGTCTTTGAGTATAGGAGGTGGAAGAGGAGGGGGATCTTCATTCAATTCCCTTCAGATCCATGAGGAGCAGAGGAAATACCCGTGTAAGTTTTGCACTAAGACGTTTTCAAGTCCTCAAGCCTTAGGAGGACACCAAAACGCCCACCGGCGTGAAAGGGTGCTTTCAAGAATGGACACAGAAATTCAAATGGGAATTTTTGGACTTGGTCATCATTTGTATCCATGCTCAAATCCTCCTTATTATCAGCAACATCCCTTCAATGCTGCAAGGACTATGCCTTTTTATCATGGAATTGGATGGCCTCATCTTGTTGCACCCACTGGCTATGGCAATCCATTTGGGATGATCAACAACTCTGGGGCCACTCAAACTCCACTGAACAATAATATGAGATTTGAAAATTATGGACGTAATAATCAGCTGCAGGTAAGGTTTTTAATGATGCAGTTGTTTTTGTCCGCTCCCACTTGGGTATTGGTCTAG 585 0.4376 MSGTLHFGNGVTGENRRQKRKMDERVAADSNVSLSLSIGGGRGGGSSFNSLQIHEEQRKYPCKFCTKTFSSPQALGGHQNAHRRERVLSRMDTEIQMGIFGLGHHLYPCSNPPYYQQHPFNAARTMPFYHGIGWPHLVAPTGYGNPFGMINNSGATQTPLNNNMRFENYGRNNQLQVRFLMMQLFLSAPTWVLV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00272 194 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre9g00272 194 MobiDBLite consensus disorder prediction 13 27 - -
Trre9g00272 194 Pfam C2H2-type zinc finger 60 85 - -
Trre9g00272 194 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Trre9g00272 194 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g00272 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Trre9g00272 194 Gene3D Classic Zinc Finger 46 97 - -
Trre9g00272 194 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 52 131 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00272 Trre-Chr9 1955181 1956065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00272 18 151 C2H2 Transcription Factor Family AT5G25160 34.074 4.50e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g00272 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00272 - - tpra:123904723 257.299