Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00259 ATGCAAGGAAGCGCCGCCGAGGGAGAAGCTTTGGATTTTGAGCCGGAGGATGATGACTTGATGGACGAAGATAATGCTCCTGACGCCGATGCTTCTCCTCCACATCCTAAACTCAAATCCGCCATAACCGCTTCTTCAACTCTCTCCGTTCCTAAAAAGACTAAAGGTCGCGGTTTCCGTCAAGATTCTGATTCCGCCGCTAATCGTACCTCTCGTCTTACTGGCTCTGAATTTGATACTCTTACTGCTGAGGGTGGTCCTGGACCTCAGAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTTCATGAGGAAGCTCAAGATGATGATTTGCAAAATGCTTTTGGTGAATATGGAGAGATTAAGAATCTTCACTTGAATCTTGATCGACGTACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATCTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAACGAGTCAGTTAAAAGAAAGAATGCCAGAGCACCTCAGCGGCGCTCCAGGAGTCCTCGGAGGAGATATACATGA 609 0.4532 MQGSAAEGEALDFEPEDDDLMDEDNAPDADASPPHPKLKSAITASSTLSVPKKTKGRGFRQDSDSAANRTSRLTGSEFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVKRKNARAPQRRSRSPRRRYT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00259 202 PANTHER RNA-BINDING PROTEIN 8A 7 200 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre9g00259 202 MobiDBLite consensus disorder prediction 63 78 - -
Trre9g00259 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Trre9g00259 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Trre9g00259 202 MobiDBLite consensus disorder prediction 10 26 - -
Trre9g00259 202 MobiDBLite consensus disorder prediction 182 202 - -
Trre9g00259 202 MobiDBLite consensus disorder prediction 188 202 - -
Trre9g00259 202 PRINTS RNA binding motif protein 8 family signature 48 60 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre9g00259 202 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre9g00259 202 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre9g00259 202 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre9g00259 202 SUPERFAMILY RNA-binding domain, RBD 89 200 IPR035979 GO:0003676
Trre9g00259 202 Gene3D - 37 188 IPR012677 -
Trre9g00259 202 SMART rrm1_1 97 170 IPR000504 GO:0003723
Trre9g00259 202 FunFam RNA-binding protein 8A 39 187 - -
Trre9g00259 202 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Trre9g00259 202 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00259 Trre-Chr9 1862339 1865881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00259 53 172 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 2.14e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00259 K12876 - gmx:100527187 332.798