Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00258 ATGGGGTGCATTTGCTCAAAATACTCTTCAAATAAAGACAAAGTTGAAGAATATGGAAAAGAAAGTGAGTGGAATAAGTCTTCAGTGCAACTAGTTGCTCCTACACAGTTAAATGGGGTTGGAGTTGGCTTGGATGGTTCTAAATCGGTGCCTCGTTTGGCTAAGGCACCTTCGCAAGTGACTAGAGCAGAAGAAGAGAAATGCAGTCACTTTGATGTTGCTATAAAAATTCAGCATCATAGATGTATGACAGTAAGTTCTGGTATAGGTGAGAAAAAACCACTAATGAGTAGAATACTCAGTGTGCAAAATTTTTCAGGAGAACAATATGTTGATTCTGGATGGCCATTATGGTTGTCTTCGGTTGCAAAAGAAGCTATCAAAGGTTGGGTTCCTAGAAGAGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCATATAGTAGTGTGCACAAAGCTCTTGACCTTGAAACTGGTAAATATGTGGCTTTGAAGAAAGTTAGATTTTCAAGTGGAGATGTTGAAAGTGTTCGTTTCATGGCAAGAGAAATCTATATTTTACGTCAACTTGACCATCCTAACATCCTCAAACTTGAAGGTCTTGTCACATCTAGAACTTCAACTAGTTTGTACCTTGTTTTTGAATATATGGAGCATGACCTTGCTGGATTAGCAGCTAGGCCTGGTGTCAAGTTCACTGAACCACAGATTAAATGTTTCATGAAGCAACTATTATCCGGGCTAGAACACTGTCATAGTAGAGGTGTGTTGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGACAACAACGGAAATTTAAAGATTGGAGATTTTGGTCTAGCAACTGTCCATGAACCTGATAGTAAGGTGCCATTAACAAGCCGTGTCGTGACTCTCTGGTACAGGGCACCTGAACTTTTACTAGGTGCTACTGACTATGGTGCTACAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCTGAATTGTTGGTGGGTAAGCCTATCATGCCCGGAAGGACAGAGGTAGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCTCCATCTGAAGGGTATTGGCAAAGGAAAAAACTTCCATATGCGACAAGTTTTAAACCACAAAACGCTTACAAACGACAACTCGCCGATACATTTAAAGACTTTCCTTCTACTGCATTAGCACTTGTTGATAGACTCCTTTCAATGGAACCGGAACAACGAGGATCTGCAACTTCTGCCCTTCACAGTGAGTTTTTCACTACAGATCCTTTGCCTTGTGATCCTTCACGTTTACCAAAGTTTCCACCAAGCAAGGAGTTTGATCTCAAGCGTCAAAATAAAGAAGCCGCAAGAAAAAATACAGAAGCTGTCAAGGGGCGCGGGCCAGGAACTGTTTTAAGAGGAGCAGGAAATACCAAAGCGTTAGAAGCACCAGAGTATAATGCTCGAGGAGATCTATCATTGCGGGGTAAGCCAAATGCTAAAATGTCCCGTCTTAGATATGAATCACAAGAAGAGGATGAGTTGAACCATAAGTGTGAAACAAGCAGAGTATCTATGCATAACTGCTATACGAATTCCACAACATTGATGCACAACAATACAACAGGACCATCCTCATTATGCAATAAGATACAAGAATCATCTATGCAGAATATTCCACAGTTAAGAACACAAAAATCTGCTTTGAATGAAGCAACAATAGATTTTTCTACTAAAAAGGAACAAGACGTGTTAGGCCAAGAAATCGGAATGAGGTACGTGCCCAAGAAAAATAGAATCCATTGTTCTGGACCGTTGATGATGTCTTCGGGTGGAAATATCGATGACATGCTAAAAGAGCACGAACGGTTAATGCAAGATGTTTTCCGTAGTGTCAAGAAGGGGAATTCGTAA 1905 0.4058 MGCICSKYSSNKDKVEEYGKESEWNKSSVQLVAPTQLNGVGVGLDGSKSVPRLAKAPSQVTRAEEEKCSHFDVAIKIQHHRCMTVSSGIGEKKPLMSRILSVQNFSGEQYVDSGWPLWLSSVAKEAIKGWVPRRADSFEKLDQIGQGAYSSVHKALDLETGKYVALKKVRFSSGDVESVRFMAREIYILRQLDHPNILKLEGLVTSRTSTSLYLVFEYMEHDLAGLAARPGVKFTEPQIKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLATVHEPDSKVPLTSRVVTLWYRAPELLLGATDYGATIDLWSAGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEGYWQRKKLPYATSFKPQNAYKRQLADTFKDFPSTALALVDRLLSMEPEQRGSATSALHSEFFTTDPLPCDPSRLPKFPPSKEFDLKRQNKEAARKNTEAVKGRGPGTVLRGAGNTKALEAPEYNARGDLSLRGKPNAKMSRLRYESQEEDELNHKCETSRVSMHNCYTNSTTLMHNNTTGPSSLCNKIQESSMQNIPQLRTQKSALNEATIDFSTKKEQDVLGQEIGMRYVPKKNRIHCSGPLMMSSGGNIDDMLKEHERLMQDVFRSVKKGNS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00258 634 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Trre9g00258 634 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00258 634 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Trre9g00258 634 Gene3D Transferase(Phosphotransferase) domain 1 221 462 - -
Trre9g00258 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Trre9g00258 634 PANTHER CELL DIVISION PROTEIN KINASE 136 428 - -
Trre9g00258 634 CDD STKc_CDK9_like 138 422 - -
Trre9g00258 634 FunFam probable serine/threonine-protein kinase At1g54610 125 220 - -
Trre9g00258 634 MobiDBLite consensus disorder prediction 438 472 - -
Trre9g00258 634 SUPERFAMILY Protein kinase-like (PK-like) 131 430 IPR011009 -
Trre9g00258 634 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00258 634 MobiDBLite consensus disorder prediction 438 458 - -
Trre9g00258 634 FunFam probable serine/threonine-protein kinase At1g54610 221 462 - -
Trre9g00258 634 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00258 Trre-Chr9 1856218 1859723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00258 130 461 Core Cell Cycle Gene Families AT5G10270 51.724 2.97e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre9g00258 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00258 K08819 - gmx:100791743 863.603