Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00252 ATGAATTGGAGTGGTTCAACAAGCACAAGTCATGGGAATGACAAGAAGCTTAAGGGAGTTCGGCGTCGAAAATGGGGCAAATGGGTGTCCGAGATTCGAGTTCCGGGGACTCAAGAACGTTTATGGTTGGGAACTTATGCTACGCCGGAGGCTGCTGCGGTGGCGCACGACGTAGCTGTTTATTGTTTAAAAAGACCTTCTACTTTGGACAAACTCAATTTTCCTGAGATTTTGTCTTCTTATTGTATTCAACAGAGAGATCATTTGATGTCTCCTAGGTCTGTTCAGAAGATTGCTTCGGATATTGCTATGGATGTCGATGCGCGAAACATCGCAAGAGAAACAACGATGAATAATGAAACTCATCATCACAATAATGAGAATCAGCAGGTGCATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTATGTGGTGATGACTTGAATTTGCAAGGTGTTACTCAAGTTTCTAGCCAACAAGAGGACTTGAACATTTCCATTGAAGATTATCTTTAG 522 0.4215 MNWSGSTSTSHGNDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLDKLNFPEILSSYCIQQRDHLMSPRSVQKIASDIAMDVDARNIARETTMNNETHHHNNENQQVHNVVADDVFWWEGLCGDDLNLQGVTQVSSQQEDLNISIEDYL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00252 173 CDD AP2 15 76 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 129 - -
Trre9g00252 173 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Trre9g00252 173 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Trre9g00252 173 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00252 Trre-Chr9 1835456 1835977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00252 1 173 AP2-EREBP Transcription Factor Family AT1G22810 42.857 3.74e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00252 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00252 - - mtr:11437172 250.751