Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00245 ATGGGATTCTGGGGGATTGAAGTTAAACCTGGCAAACCGGTTCCTTATCACACTGATAATGTGCAAGGGAAGCTTCATGTCACTCAGGCTACATTAGGAGATGGTTCATCAGGGGGAAAAAGCATTCTTCAGTGCTCTTCCGGACACAAAAATCCAGTTTTTCTGTGTACTTTGCTGCCAAATAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGATGAGGAAGACTTGGTGGCATTCTCAGTCATCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTAGCAGATGATGAGGACGACCTAAGGGATGACTATGAATATGATTCATTGGGAGAGGACGTGGGAACTGATTCAGAGGAGTCATCTGAATATGATAGCGAAAATGGATATGATGATCATTTTTTTGACGATAGTGATATGGAGATGTACACATCTTCACCAGTCCGTAATAGTGGAGTTGTCATTGAGGAACTACCCGATGACAATCAGCCTGAAAATGGAGATGATCCAGCTAAGAAATCAAAGAAAAAGGAACAGCCAGCTCTCTTGAAAGAGAAAGCTAGCAAAAGTTCTCAGCTTCCAGATGATCCTAGTGGTGACAAGAACCTCGTTCTGGAAAGTGAAGATGAAGATGGTTTCCCAATTTCCACCTCAGAGAAAGTTAAAACTGAGACTAAGAAGGCAAAAGGAGAACAAGCCCACAAAAAAACTGGGAAATCCAACAAGAAGGAAAAGGATGTTGATCCCTCTGCTAGCTTAAAACGAAAAGGTCAAGTTGTCGAAGAGGATGAGCAGCTGCAAGATGGGAAGAAGACAAAGAAGAATAAGTTGAAAGATGGTAAGGAAGAAATTGCTCATTTAAAGGAGACTAATGTTACTGTGCAAGATGAAAAGCATTCGGAGGGTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTTTCTCATGCAAATGCTGGAGATGATGGAAAACAATCAAATAATGAAGTCCTTGTTGAGAAGAAAAACAAGAATAAAAAGAAGAAAAAGACCAAAGAGACTGAAGGAGAAGCTGCTGCGAATGACATTGCCACACCTGTTCAAAATAAGAAGTTGTCTACCTCTGAGAAAAAAGAGAAAGGTCAAACTGAAGCCAAGCCATCTAATGTGAGAACCTATCCGAATGGGTTGGTTATAGAGGACATATCTATGGGTAAACCAGATGGCAAAAGAGCTGATCTTGGAAAAAAGGTCAGTGTTAAATATATTGGCAAGCTAAAAAAAGATGGGAAAATATTTGATTCATGTGTTGGAAAAGCACCCTTTAAGTTTCGCCTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCATCAATGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGATACGGAGACAAACGCGCTGGGATTATACCACAAAATTCGTGGCTTGTATTTGATGTTGAGTTGGTTGGTGTTGGTAACTAA 1494 0.411 MGFWGIEVKPGKPVPYHTDNVQGKLHVTQATLGDGSSGGKSILQCSSGHKNPVFLCTLLPNKVETCPLNLKFDEEDLVAFSVIGSRSIHLSGYFVADDEDDLRDDYEYDSLGEDVGTDSEESSEYDSENGYDDHFFDDSDMEMYTSSPVRNSGVVIEELPDDNQPENGDDPAKKSKKKEQPALLKEKASKSSQLPDDPSGDKNLVLESEDEDGFPISTSEKVKTETKKAKGEQAHKKTGKSNKKEKDVDPSASLKRKGQVVEEDEQLQDGKKTKKNKLKDGKEEIAHLKETNVTVQDEKHSEGEEVKTTTNQNNVSHANAGDDGKQSNNEVLVEKKNKNKKKKKTKETEGEAAANDIATPVQNKKLSTSEKKEKGQTEAKPSNVRTYPNGLVIEDISMGKPDGKRADLGKKVSVKYIGKLKKDGKIFDSCVGKAPFKFRLGVGQVIKGWDVGINGMRVGDKRRLTIPPSMGYGDKRAGIIPQNSWLVFDVELVGVGN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00245 497 MobiDBLite consensus disorder prediction 307 326 - -
Trre9g00245 497 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 404 493 IPR001179 GO:0003755
Trre9g00245 497 MobiDBLite consensus disorder prediction 166 185 - -
Trre9g00245 497 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 409 496 IPR001179 GO:0003755
Trre9g00245 497 MobiDBLite consensus disorder prediction 106 127 - -
Trre9g00245 497 Gene3D - 358 497 IPR046357 GO:0003755
Trre9g00245 497 SUPERFAMILY FKBP-like 369 495 - -
Trre9g00245 497 FunFam Peptidyl-prolyl cis-trans isomerase 384 497 - -
Trre9g00245 497 MobiDBLite consensus disorder prediction 106 385 - -
Trre9g00245 497 Coils Coil 271 298 - -
Trre9g00245 497 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre9g00245 497 Gene3D Nucleoplasmin core domain 1 101 - -
Trre9g00245 497 PIRSF FK506-bp_FPR3 1 53 IPR023566 GO:0003755
Trre9g00245 497 PIRSF FK506-bp_FPR3 261 496 IPR023566 GO:0003755
Trre9g00245 497 PIRSF FK506-bp_FPR3 44 278 IPR023566 GO:0003755
Trre9g00245 497 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 276 - -
Trre9g00245 497 MobiDBLite consensus disorder prediction 202 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00245 Trre-Chr9 1769251 1773336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00245 409 493 Calmodulin-binding Proteins AT3G25230 50.575 7.40e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00245 K14826 - gmx:100789099 642.884