Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00244 ATGTCTTCAAGTGGTGCTGCTAGTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGAAAATGGGTTTCCGAAATCCGCGAGCCGGGTACCAAGACAAGAATTTGGTTAGGAAGTTTTGAGACACCGGAGATGGCTGCAGCTGCATATGACGTCGCTGCTTTGCATTTTCGGGGACGTGAAGCTAGACTCAATTTCCCCGAACTCGCAACTAGTCTTCCTCGTCCTATAAGCAACAATGCCGACCACATTCGAATGGCAGCACATGAAGCCGCCTTAAGGCTAAGAACCAATATGTTGGCGCCACCGGATAACAGTGGAACAGGCTCTGCCAGTTCTACTGATTCGGTGGTGCCTTTGACCGTGAGACTCTCTCCGAGTCAAATTCAAGCGATTAATGATTCGCCTATGGATTCACCTCCTACATGGATGCAAATGTCACACCCTTTCATGATGGATGATCAAACCATATTTTATGGTAATCATGGCTATGAATTTGATGAGAATTATGAGTGGGAGGATATGCAGCAGAATGATTCTCTTTGGGATCCTTAA 555 0.4667 MSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATSLPRPISNNADHIRMAAHEAALRLRTNMLAPPDNSGTGSASSTDSVVPLTVRLSPSQIQAINDSPMDSPPTWMQMSHPFMMDDQTIFYGNHGYEFDENYEWEDMQQNDSLWDP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00244 184 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Trre9g00244 184 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Trre9g00244 184 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Trre9g00244 184 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Trre9g00244 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00244 Trre-Chr9 1765627 1766181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00244 9 184 AP2-EREBP Transcription Factor Family AT1G71450 59.783 1.02e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00244 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00244 - - gmx:100801245 286.189