Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00242 | ATGCAAGAATCAAACAGCATGCATCAAGAACATGTTGAAATTGCTCCTCCAAAACCAAGTACAACATCTTATATTGGAGTTAGGAAGAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAACCAGGTAAGAAAAGTAGAATTTGGTTAGGAAGCTATGAAGAACCACAAATGGCTGCAGCAGCTTATGATGTAGCAGCATTTCATCTTAAAGGTCGTGCCGCGAGGCTAAATTTTCCGGAGTTGGTTGAGAAACTTCCAATGCCTCCTTCAGGTTCTGAAGGGGGTGGTAATAGCAATGGAAATGAAAATGTTGTTCCTTCTGTGAGAGTTGGGCTTTCACCTTCTCAAATTCAAGCAATTAATGAGCTTCCTTTTGATTCACCAAAGATGTTTGGATTTGAATTTGATGAATCTAGGACGATGTTTTATGATGATAGTAATGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGACTCATTGTGGGACTAG | 498 | 0.3835 | MQESNSMHQEHVEIAPPKPSTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDVAAFHLKGRAARLNFPELVEKLPMPPSGSEGGGNSNGNENVVPSVRVGLSPSQIQAINELPFDSPKMFGFEFDESRTMFYDDSNVLELSEWEEIQYDSLWD | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00242 | 165 | CDD | AP2 | 24 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | SMART | rav1_2 | 23 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | SUPERFAMILY | DNA-binding domain | 23 | 81 | IPR016177 | GO:0003677 | |
Trre9g00242 | 165 | MobiDBLite | consensus disorder prediction | 93 | 108 | - | - | |
Trre9g00242 | 165 | ProSiteProfiles | AP2/ERF domain profile. | 23 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 119 | - | - | |
Trre9g00242 | 165 | Gene3D | AP2/ERF domain | 23 | 82 | IPR036955 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Trre9g00242 | 165 | MobiDBLite | consensus disorder prediction | 85 | 108 | - | - | |
Trre9g00242 | 165 | Pfam | AP2 domain | 23 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | FunFam | Ethylene-responsive transcription factor 2 | 22 | 81 | - | - | |
Trre9g00242 | 165 | PRINTS | Ethylene responsive element binding protein signature | 24 | 35 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00242 | 165 | PRINTS | Ethylene responsive element binding protein signature | 62 | 82 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00242 | Trre-Chr9 | 1741329 | 1741916 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00242 | 22 | 165 | AP2-EREBP Transcription Factor Family | AT1G71450 | 48.503 | 9.24e-43 | 139 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre9g00242 | AP2 | 4.4e-11 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00242 | - | - | cam:101493379 | 206.453 |