Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00242 ATGCAAGAATCAAACAGCATGCATCAAGAACATGTTGAAATTGCTCCTCCAAAACCAAGTACAACATCTTATATTGGAGTTAGGAAGAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAACCAGGTAAGAAAAGTAGAATTTGGTTAGGAAGCTATGAAGAACCACAAATGGCTGCAGCAGCTTATGATGTAGCAGCATTTCATCTTAAAGGTCGTGCCGCGAGGCTAAATTTTCCGGAGTTGGTTGAGAAACTTCCAATGCCTCCTTCAGGTTCTGAAGGGGGTGGTAATAGCAATGGAAATGAAAATGTTGTTCCTTCTGTGAGAGTTGGGCTTTCACCTTCTCAAATTCAAGCAATTAATGAGCTTCCTTTTGATTCACCAAAGATGTTTGGATTTGAATTTGATGAATCTAGGACGATGTTTTATGATGATAGTAATGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGACTCATTGTGGGACTAG 498 0.3835 MQESNSMHQEHVEIAPPKPSTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDVAAFHLKGRAARLNFPELVEKLPMPPSGSEGGGNSNGNENVVPSVRVGLSPSQIQAINELPFDSPKMFGFEFDESRTMFYDDSNVLELSEWEEIQYDSLWD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00242 165 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Trre9g00242 165 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Trre9g00242 165 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Trre9g00242 165 MobiDBLite consensus disorder prediction 93 108 - -
Trre9g00242 165 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Trre9g00242 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 119 - -
Trre9g00242 165 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Trre9g00242 165 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g00242 165 MobiDBLite consensus disorder prediction 85 108 - -
Trre9g00242 165 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Trre9g00242 165 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Trre9g00242 165 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Trre9g00242 165 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00242 Trre-Chr9 1741329 1741916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00242 22 165 AP2-EREBP Transcription Factor Family AT1G71450 48.503 9.24e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00242 AP2 4.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00242 - - cam:101493379 206.453