Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00196 ATGTTCTTCGTACATGCCCTAGCTCACTTTCCACTTGACTCAAATTGGTACGATGCCCATGCAACCTTCTATGGTGACATGCAAGGTGATGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTTTCAACAAGGATACGGGCTTGAAACCACAGCACTAAGCACTGCACTATTCAACGAAGGCTATAGATGTGGTGCATGTTTTGAGATCAAGTGTGTCAATGACTCTCAATGGTGTCTAAAAAATGTGAACCCAATCATCGTTACCGCAACAAATTTTTGTCCTCCAAATTATTCCAAACCCGATGGCAATTGGTGTAATCCTCCACAAAAACACTTCGACTTAAGCATGAAAATGTTCACAACTATTGCCATTTACCAAGCAGGTATTGTCCCCGTTCAATATCGACGTGTTCCATGCATCAAAAGTGGTGGTGTTAGGTTCGAGCTTAGAGGAAACCCTTATTTTTTAATGGTTTTGGTATACAATGTGGCCAATGCTGGTGATGTTTTACGTGTGTATATCAAAGGATCTAATACTAATTGGGCTCCAATGACACATAATTGGGGACAAGTTTGGCATACAGGAATAAATTTAGTTGGACAAGACTTATCTTTTTGGGTTACTACAAGTGATAGAAAAGCTTTGGAGTTTGTTTCTCTTATTCCTTCCAATTGGCAATTTGGACAAACTTATGAAGCTTCAAGAAATTTTTAG 720 0.3986 MFFVHALAHFPLDSNWYDAHATFYGDMQGDETMQGACGYGDLFQQGYGLETTALSTALFNEGYRCGACFEIKCVNDSQWCLKNVNPIIVTATNFCPPNYSKPDGNWCNPPQKHFDLSMKMFTTIAIYQAGIVPVQYRRVPCIKSGGVRFELRGNPYFLMVLVYNVANAGDVLRVYIKGSNTNWAPMTHNWGQVWHTGINLVGQDLSFWVTTSDRKALEFVSLIPSNWQFGQTYEASRNF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00196 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 235 IPR007117 -
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Trre9g00196 239 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Trre9g00196 239 Gene3D - 146 239 IPR036749 -
Trre9g00196 239 Pfam Lytic transglycolase 51 136 IPR009009 -
Trre9g00196 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 146 IPR007112 -
Trre9g00196 239 PRINTS Expansin signature 46 60 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 192 213 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 121 134 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 104 121 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 87 97 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 221 237 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 73 84 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 157 178 IPR002963 GO:0009664
Trre9g00196 239 PRINTS Expansin signature 145 157 IPR002963 GO:0009664
Trre9g00196 239 PANTHER EXPANSIN-A15 13 238 IPR002963 GO:0009664
Trre9g00196 239 SMART dpbb_1 51 136 IPR007112 -
Trre9g00196 239 Pfam Expansin C-terminal domain 147 224 IPR007117 -
Trre9g00196 239 SUPERFAMILY Barwin-like endoglucanases 7 164 IPR036908 -
Trre9g00196 239 CDD DPBB_EXPA_N 16 141 - -
Trre9g00196 239 Gene3D - 8 141 IPR036908 -
Trre9g00196 239 SUPERFAMILY PHL pollen allergen 143 234 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00196 Trre-Chr9 1490862 1492021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00196 12 239 Expansin Gene Family AT5G39280 64.474 4.35e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00196 - - csav:115700526 360.918