Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00190 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATTGCAACATTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCAGCAATGGTGTATCTTTCGACATCCAAGATTAGTTTGGTGCTTCTACTCAACATGGGTTTGGTTATTATGTGTGTTCTGTGGCAACTAACGAAAAAGGTTTTCTTGGGAAATCTTCGAGAAGCGGAGGTTGAGAGACTTAATGAGCAATCGTGGAGGGAGGTTATGGAGATTCTCTTTGCGATTACTATTTTTAGGCAGGATTTCTCGGTTACTTTCCTAGCGATGGTTACGGCACTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTTGAGTATATCGAGACCACTCCTACGGTGACAACGCTGTCCCATATTCGGATTGTGTCTTTTATGGGTTTCCTCCTTCTTCTAGATAGCATTTTCTTATATAGTTCTTTGAAGCATTTGATAGAAACATGGCAGGCTTCCGTTTCGCTGTTCTTTGCTTTTGAGTACATGATATTGGCAACAACAACAGTGTCAATTTTTGTAAAATATGTTTTCTATGTCAGCGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTTACATTTTACCTGGAACTTGTTAGGGACTTGCTACACTTGTCCATGTATCTGTGCTTCTTCTGTGTTATATTTGTAAACTACGGCATTCCCTTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTCATTGCTAGTGATGCAACTTGCATCATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCATGGCTGGAACGACAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGCAACAACTGTTGCTGGAGGGCAGCAAGGATCACAATCAGATAATCAACGACAGGGCACCGGAAGCGAAAGTCAAACTGAGCTTGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCTAGACTCCAAGCAGCAGCTGCTGCAGCTGCAATATATGAGAAGTCTTATGTTTATCCCTCTGCAACTTCCTTTGTACGACCTCCTGGAGAACTAGCTTCCAGTCAACAAGCCCAGAAGCAGTTTCATATTCCTGGCGGACCAGCAAATGTACCCTTTCCTCCAATGGGGCACTTCCATTTTCTTCCTTCCCAACCACATGTGACCCCTTTGAATTATGGAGAGGGGTTTGGAAATGATCCAAACATCCAAAGCTTGCAGTTTGAAGCTAATAAAAAATTACTGCAACAACAGATTGAGATTCTGCAAAATCATCTACAGAATTTGCAGTTCACGGAGGCTGAGAGAAGTGTAGATGACGGGACATCATCATCATCAGAAAGCAGAGGCAAGCTTAGCACTTCCGATTGA 1548 0.4283 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFCVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELIASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENATTVAGGQQGSQSDNQRQGTGSESQTELGSGVATDSLSRHQARLQAAAAAAAIYEKSYVYPSATSFVRPPGELASSQQAQKQFHIPGGPANVPFPPMGHFHFLPSQPHVTPLNYGEGFGNDPNIQSLQFEANKKLLQQQIEILQNHLQNLQFTEAERSVDDGTSSSSESRGKLSTSD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00190 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Trre9g00190 515 SUPERFAMILY RING/U-box 272 336 - -
Trre9g00190 515 PANTHER RING ZINC FINGER PROTEIN 1 505 - -
Trre9g00190 515 MobiDBLite consensus disorder prediction 340 374 - -
Trre9g00190 515 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Trre9g00190 515 Coils Coil 471 494 - -
Trre9g00190 515 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Trre9g00190 515 SMART ring_2 292 329 IPR001841 -
Trre9g00190 515 CDD RING-H2_synoviolin 289 330 - -
Trre9g00190 515 MobiDBLite consensus disorder prediction 492 515 - -
Trre9g00190 515 Pfam Ring finger domain 291 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00190 Trre-Chr9 1461973 1466190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00190 1 510 C3H Transcription Factor Family AT3G16090 66.408 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00190 K10601 - gmx:100782356 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00190 9 1461973 1466190 Trre9g00190 9 1461973 1466190 ECH