Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00188 ATGTTGTCATTAGATCATGCCAAACAAACCACTACTACAGATTCTGTAGTAATTAACCAACAAAAACAAAAACAAAAACCCTCTCATGATTATGATTCTACTAATCATATATTTAAATCTAAGTTACCAGATATACCAATTTCTAACCACCTCCCACTTCACACCTATTGCGTCGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCCACCGGAAAAACGTACACCTATGCAGAAACTCATCTCCAATGTCGAAAACTCGCTGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATCATGATTCTCCTCCAAAATTCAGCTGAATTTGTTCTCTCCTTCCTCGCCGCCTCCATGATCGGTGCAGTAGCCACCACCGCTAATCCTTTCTACACCAGCGCCGAGATCTTCAAACAAATAACGGTTTCCAAAACGAAACTAATCATCACACAAGCAATGTACGTAGATAAACTGAAGCAGAACGAGGAGAAGGATGAATTAATTGATTTCAAGATAATCACCGTCGACGAACCGCCAGTGAATTGTTTACATTTCTCGGTGATTTCCGAAGCAAACGAAGATGAATTACCGGAAGTGGAATTCGATCCGGAAGACGCGGTGGCGCTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTAATTCTAACGCATAAAAGCTTAACAACAAGCGTTGCTCAACAAGTAGATGGAGAGAATCCGAATCTGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTGCGCTCAGCACTGTGCTATTGTGCGCACTTAGAGCAGGGAGTGCTGTTCTGTTAATCCAAAAATACGAGATCGGAACCTTGCTTGGTCTTATAGAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCGTTAGTTTTGGCGTTAGCGAAGAATCCTATTGTGGCGGAATTTGATCTTAGTTCGATAAGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGAGAGGAGCTTGAAGAAATGCTTCGTAACCGAATTCCTCAAGCTGTTTTGGGACAAGGATATGGTATGACAGAGGCAGGCCCAGTTCTATCCATGTCTTTGAGTTTTGCAAAGCATCCATTGCCAGTAAGCTCAGGTTCATGTGGCACAGTTGTAAGAAATGCAGAGCTCAAAATTCTTGACTGTGAAACTGGTCGTTCTCTTGATTATTATCAACCTGGTGAAATTTGCATTCGAGGCCAACAAATCATGAAAGGATATTTGAATGATGAGAATGCAACAAAAGCAACTATTGATGAGGGGGGTTGGCTTCATACCGGTGATATTGGATATATAGATGACAATGATGAGATTTTCATCGTTGAGAGAGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTACCCCCTGCTGAACTTGAAGGCCTGCTTATAAGCCATCCATCAATTGTAGATGCAGCTGTTGTCCCGCAAAAAGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTTATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAGAGACTGCACAAAGTTTATTTCATTAATGCAATTCCAAAGTCTCCATCAGGAAAGATACTCAGGAAAGATCTCAAAGCAAAGTTAGAAAATACCACCTAA 1710 0.414 MLSLDHAKQTTTTDSVVINQQKQKQKPSHDYDSTNHIFKSKLPDIPISNHLPLHTYCVEKLSEISDRPCLIVASTGKTYTYAETHLQCRKLAAGLSKLGIQKGDVIMILLQNSAEFVLSFLAASMIGAVATTANPFYTSAEIFKQITVSKTKLIITQAMYVDKLKQNEEKDELIDFKIITVDEPPVNCLHFSVISEANEDELPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFALSTVLLCALRAGSAVLLIQKYEIGTLLGLIEKHKVTVAMVVPPLVLALAKNPIVAEFDLSSIRLVLSGAAPLGEELEEMLRNRIPQAVLGQGYGMTEAGPVLSMSLSFAKHPLPVSSGSCGTVVRNAELKILDCETGRSLDYYQPGEICIRGQQIMKGYLNDENATKATIDEGGWLHTGDIGYIDDNDEIFIVERVKELIKFKGFQVPPAELEGLLISHPSIVDAAVVPQKDVAAGEVPVAFVVRSNGLYLTEEAVKEFIAKQVVFYKRLHKVYFINAIPKSPSGKILRKDLKAKLENTT 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00188 569 CDD 4CL 47 561 - -
Trre9g00188 569 Pfam AMP-binding enzyme 65 471 IPR000873 -
Trre9g00188 569 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Trre9g00188 569 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 32 563 - -
Trre9g00188 569 FunFam 4-coumarate--CoA ligase 2 467 568 - -
Trre9g00188 569 MobiDBLite consensus disorder prediction 1 32 - -
Trre9g00188 569 SUPERFAMILY Acetyl-CoA synthetase-like 36 567 - -
Trre9g00188 569 Pfam AMP-binding enzyme C-terminal domain 480 555 IPR025110 -
Trre9g00188 569 FunFam Long-chain-fatty-acid--CoA ligase FadD 39 466 - -
Trre9g00188 569 Gene3D - 28 465 IPR042099 -
Trre9g00188 569 Gene3D - 466 568 IPR045851 -
Trre9g00188 569 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00188 Trre-Chr9 1441431 1447639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00188 13 478 Monolignol Biosynthesis Gene Families AT1G65060 67.804 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00188 K01904 - gmx:547492 881.322