Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00187 ATGTTGTCATTAGCTCCTTCTATTGATGCCAAACAAACCACTACTACAGAAGTCTCTGCTGCTTCTGTAGTAATTAACCAACAAAAACAAAAACCCTCTGATGATTATGATTCTGCTAATCATGATTCCATTATTAATAATTCTCAACAACAAAGTACTAATCATATATTTAAATCTAAATTACCAGATATACCAATATCTAACCACCTCCCACTTCACACCTACTGCTTCGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCTACCGGAAAAACATACACCTATGGAGAAACTTATCTCCAATGTCGAAAAATCGCATCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATTATGATTCTCCTTCAAAATTCAGCTGAATTTGTTTTCTCCTTCCTAGCCGCCTCCATGATCGGTGCCGTCGCCACCACCGCTAATCCTTTCTACACCAGCGCCGAGATCTTCAAACAAATAACCGCTTCCAAAACAAAACTAATCATCACGCAAGCAATGTACGTTGATAAACTGAAACAGAACGAGGAGAAAGATGAATTAATTGATTTCAAGATAATCACCGTTGATGAACCGCCGGTGAATTGTTTACATTTCTCGGTGATTTCCGAAGCGAATGAAGATCAATTACCGGAAGTTGAATTCGATCCAGAAGATGCGGTGGCGCTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTAATTCTAACGCATAAGAGCTTAACAACAAGCGTTGCTCAACAAGTAGATGGAGAGAATCCGAATCTGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTTCTCTTAACAGTGTGCTATTGTGCGCACTGAGAGCAGGGAGTGCTGTTCTGTTAATGCATAAATTCGAGATCGGAACGTTGCTTGGTCTTATAGAGAAGCATAAAGTGACGGTGGCGATGGTTGTACCGCCGTTAGTTTTGGCGTTAGCTAAGAATCCTACGGTGGCGGAATTTGATCTTAGTTCAATACGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGGAAGGAGCTTGAAGAAACGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAGGGATACGGCATGACAGAGGCTGGCCCAGTATTGTCCATGTCTTTGGGTTTTGCAAAGCATCCATTGCCAGTAAGTTCTGGTTCATGTGGAACCGTTGTAAGAAATGCAGAACTCAAAGTTCTTGACTCTGAAACTGGTCGCTCTCTTGGTTATAATCAACCCGGTGAAATTTGCATCCGTGGCCAACAAATCATGAAAGGATATTTGAATGATGAAAATGCAACAAAAACTACTATTGATGAAGAGGGTTGGCTTCATACTGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTAGTAAGCCATCCATCTATTGCAGATGCAGCTGTTGTCCCGCAAAAGGATGTGGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAGGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTATTTTATAAGAGACTGCACAAAGTGTATTTCATTCATGCAATTCCCAAGTCTCCATCAGGAAAGATACTGAGGAAAGATCTCAGAGCAAAGTTAGAAAGTACCACCCAAAAGCCTTGA 1776 0.4144 MLSLAPSIDAKQTTTTEVSAASVVINQQKQKPSDDYDSANHDSIINNSQQQSTNHIFKSKLPDIPISNHLPLHTYCFEKLSEISDRPCLIVASTGKTYTYGETYLQCRKIASGLSKLGIQKGDVIMILLQNSAEFVFSFLAASMIGAVATTANPFYTSAEIFKQITASKTKLIITQAMYVDKLKQNEEKDELIDFKIITVDEPPVNCLHFSVISEANEDQLPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLGLIEKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRLVLSGAAPLGKELEETLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPVSSGSCGTVVRNAELKVLDSETGRSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLESTTQKP 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00187 591 ProSitePatterns Putative AMP-binding domain signature. 234 245 IPR020845 -
Trre9g00187 591 Gene3D - 46 484 IPR042099 -
Trre9g00187 591 Pfam AMP-binding enzyme 84 490 IPR000873 -
Trre9g00187 591 Pfam AMP-binding enzyme C-terminal domain 499 574 IPR025110 -
Trre9g00187 591 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 51 582 - -
Trre9g00187 591 Gene3D - 485 588 IPR045851 -
Trre9g00187 591 CDD 4CL 66 580 - -
Trre9g00187 591 FunFam 4-coumarate--CoA ligase 2 486 587 - -
Trre9g00187 591 FunFam Long-chain-fatty-acid--CoA ligase FadD 58 485 - -
Trre9g00187 591 SUPERFAMILY Acetyl-CoA synthetase-like 62 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00187 Trre-Chr9 1434598 1439497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00187 28 497 Monolignol Biosynthesis Gene Families AT1G65060 70.825 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00187 K01904 - gmx:547492 908.672