Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00185 ATGTTGTCATTAGCTCATGCCAAACAAACCACTACTACAGATTCTGTAGTAATTAACCAACAAAAACAAAAACCCTCTCATGATTATGATTCTACTAATCATGTATTTAAATCTAAACTACCAGATATACCAATTTCTAACCACCTCCCACTCCACACCTATTGCTTTGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCCACTGGAAAAACATACACCTATGCAGAAACTAATCTCCAATGTCGAAAAATCGCTGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATCTGATCATGATTCTACTGCAAAATTCAGCTGAATTTGTTCTCTCTTTCCTCGCCGCCTCCATGATCGGTGCAGTCGCCACCACTGCTAATCCTTTCAACACCGGCGCCGAGATCTTCAAACAAATAATTGCATCCAACACAAAGCTAATCATCACACAAGCAATGCACGTTGATAAACTGAAACAGAACGAGGAGAAGGATAAATTAATTGATTTAAAGATAATCACCGTCGATGAACAGCCGGTGAATTGTTTACATTTCTCGGTGATTTCTGAAGCAAACGAAGATGAATTACCGGAAGTGGAATTCGATCCGGAAGACGCGGTGGCGCTTCCATTTTCTTCCGGAACAACGGGGTTACCTAAAGGAGTAATTCTAACGCATAAGAGCTTAATAACAAGCGTTGCTCAACAAGTTGATGGAGAGAATCCACATATGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTGCGCTCAGCAGTGTGCTATTGTGCGCACTTAGAGCAGGGAGTGCGGTTCTGTTAATGCATAAATTCGAGATCGGAACATTGCTTGGTCTTATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCATTAGTTTTGGCGTTAGCGAAGAATCCTACGGTGGCGGAGTTTGATCTTAGTTCGATACGGATGGTGCGTTCAGGAGCTGCACCGTTAGGAAATGAGCTTGAAGGAATGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAGGGATACGGTATGACAGAGGCAGGCCCAGTACTATCTATGTCTTTGGGTTTTGCAAAGCATCCATTGCCAATAAGCTCAGGTTCATGTGGCACTGTTGTAAGAAATGCAGAGCTCAAAATTTTTGATCATGAAACTAGTCGCTCTCTTGGTTATAATCAACCTGGTGAAATTTGTATCCGAGGCCAACAAATCATGAAAGAGGGTTGGCTTCATACTGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTTATAAGCCATCCATCTATTGCAGATGCAGCTGTTGTCCCTCAAAAAGATATTGTTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAAAGACTGCACAAAGTTTATTTCATTCATGCAATTCCAAAGTCTCCATCTGGAAAGATACTGAGGAAAGACCTCAGATCAAAGTTAGACAGTACCAACTAA 1659 0.4147 MLSLAHAKQTTTTDSVVINQQKQKPSHDYDSTNHVFKSKLPDIPISNHLPLHTYCFEKLSEISDRPCLIVASTGKTYTYAETNLQCRKIAAGLSKLGIQKGDLIMILLQNSAEFVLSFLAASMIGAVATTANPFNTGAEIFKQIIASNTKLIITQAMHVDKLKQNEEKDKLIDLKIITVDEQPVNCLHFSVISEANEDELPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPHMYLTTEDVLLCVLPLFHIFALSSVLLCALRAGSAVLLMHKFEIGTLLGLIQKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRMVRSGAAPLGNELEGMLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPISSGSCGTVVRNAELKIFDHETSRSLGYNQPGEICIRGQQIMKEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLISHPSIADAAVVPQKDIVAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRSKLDSTN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00185 552 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g00185 552 Gene3D - 26 448 IPR042099 -
Trre9g00185 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 546 - -
Trre9g00185 552 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Trre9g00185 552 Pfam AMP-binding enzyme 63 424 IPR000873 -
Trre9g00185 552 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Trre9g00185 552 CDD 4CL 45 544 - -
Trre9g00185 552 MobiDBLite consensus disorder prediction 1 32 - -
Trre9g00185 552 SUPERFAMILY Acetyl-CoA synthetase-like 41 548 - -
Trre9g00185 552 Gene3D - 449 550 IPR045851 -
Trre9g00185 552 ProSitePatterns Putative AMP-binding domain signature. 213 224 IPR020845 -
Trre9g00185 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00185 Trre-Chr9 1416565 1418934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00185 32 461 Monolignol Biosynthesis Gene Families AT1G65060 68.080 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00185 K01904 - gmx:547492 835.869