Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00184 ATGTTGTCATTAGCTCATGCCAAACAAACCACTACTACAGATTCTGTAGTAATTAACCAACAAAAACAAAAACCCTCTCATGATTATGATTCTACTAATCATGTATTTAAATCTAAACTACCAGATATACCAATTTCTAACCACCTCCCACTCCACACCTATTGCTTTGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCCACTGGAAAAACATACACCTATGCAGAAACTAATCTCCAATGTCGAAAAATCGCTGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATCTGATCATGATTCTACTGCAAAATTCAGCTGAATTTGTTCTCTCTTTCCTCGCCGCCTCCATGATCGGTGCAGTCGCCACCACTGCTAATCCTTTCAACACCGGCGCCGAGATCTTCAAACAAATAATTGCATCCAACACAAAGCTAATCATCACACAAGCAATGCACGTTGATAAACTGAAACAGAACGAGGAGAAGGATAAATTAATTGATTTAAAGATAATCACCGTCGATGAACAGCCGGTGAATTGTTTACATTTCTCGGTGATTTCTGAAGCAAACGAAGATGAATTACCGGAAGTGGAATTCGATCCGGAAGACGCGGTGGCGCTTCCATTTTCTTCCGGAACAACGGGGTTACCTAAAGGAGTAATTCTAACGCATAAGAGCTTAATAACAAGCGTTGCTCAACAAGTTGATGGAGAGAATCCACATATGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTGCGCTCAGCAGTGTGCTATTGTGCGCACTTAGAGCAGGGAGTGCGGTTCTGTTAATGCATAAATTCGAGATCGGAACATTGCTTGGTCTTATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCATTAGTTTTGGCGTTAGCGAAGAATCCTACGGTGGCGGAGTTTGATCTTAGTTCGATACGGATGGTGCGTTCAGGAGCTGCACCGTTAGGAAATGAGCTTGAAGGAATGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAGGGATACGGTATGACAGAGGCAGGCCCAGTACTATCTATGTCTTTGGGTTTTGCAAAGCATCCATTGCCAATAAGCTCAGGTTCATGTGGCACTGTTGTAAGAAATGCAGAGCTCAAAATTTTTGATCATGAAACTAGTCGCTCTCTTGGTTATAATCAACCTGGTGAAATTTGTATCCGAGGCCAACAAATCATGAAAGATGACAATGATGAGATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTTATAAGCCATCCATCTATTGCAGATGCAGCTGTTGTCCCTCAAAAAGATATTGTTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAAAGACTGCACAAAGTTTATTTCATTCATGCAATTCCAAAGTCTCCATCTGGAAAGATACTGAGGAAAGACCTCAGATCAAAGTTAGACAGTACCAACTAA 1623 0.414 MLSLAHAKQTTTTDSVVINQQKQKPSHDYDSTNHVFKSKLPDIPISNHLPLHTYCFEKLSEISDRPCLIVASTGKTYTYAETNLQCRKIAAGLSKLGIQKGDLIMILLQNSAEFVLSFLAASMIGAVATTANPFNTGAEIFKQIIASNTKLIITQAMHVDKLKQNEEKDKLIDLKIITVDEQPVNCLHFSVISEANEDELPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPHMYLTTEDVLLCVLPLFHIFALSSVLLCALRAGSAVLLMHKFEIGTLLGLIQKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRMVRSGAAPLGNELEGMLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPISSGSCGTVVRNAELKIFDHETSRSLGYNQPGEICIRGQQIMKDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLISHPSIADAAVVPQKDIVAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRSKLDSTN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00184 540 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Trre9g00184 540 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g00184 540 SUPERFAMILY Acetyl-CoA synthetase-like 41 536 - -
Trre9g00184 540 MobiDBLite consensus disorder prediction 1 31 - -
Trre9g00184 540 CDD 4CL 45 532 - -
Trre9g00184 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 425 - -
Trre9g00184 540 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Trre9g00184 540 Gene3D - 437 538 IPR045851 -
Trre9g00184 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 534 - -
Trre9g00184 540 Pfam AMP-binding enzyme 63 424 IPR000873 -
Trre9g00184 540 ProSitePatterns Putative AMP-binding domain signature. 213 224 IPR020845 -
Trre9g00184 540 Gene3D - 26 436 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00184 Trre-Chr9 1416565 1418934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00184 32 449 Monolignol Biosynthesis Gene Families AT1G65060 65.848 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00184 K01904 - gmx:547492 803.897