Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00171 ATGATGAGAACACCAAATAATGATGAAAGTGGTTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTTGATCACATTCAAAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCAGATATTAGAAGAGGGAAATTTTCTGATGAAGAAGAGAATCTCATCATCAATTTGCATTCTGTTCTTGGAAATAAGTGGGCATCTATAGCAACACATCTTCCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGACCACCTAGACCTTCTTAGTAATTTACAACAAATAATATTGAATGCTGCAAACATTGTTAGCAATTGTGACATAAATAATGCTCTAAGGCTACAATATTCATTGCTCCCACAAAGTTTGGTGAATGGTGTTTTGGGATTTAATAATAACATACAAAATTTTTATGATGGTACAAATATTGGTATTTCTTCTCAAATAATTCAGCCTAATTTGCAAAACTTTGAAGCTCCTATTCAACAATTTCTACCACAAGAATGTGAGTACTCTCAGAAATTTGATGAACAAATTGGTAACACAAATGTTGATTCCGCGATATCATCAAATTCGCTTCCAAAGTTGGTTTCGGTTTCACCTCAACGTTTAGCAACGGTTAAGGTATGCGACGAAAACATGATGATAAATGAAAAGGAGTGTTGTAACACTTCTTCCACAAGCTTTGAAACTTGGGAAGATTTCATGAATGAGGATGCAAATGATGCTTATTGGAAAGATTTCATAGAACAACAATATTCAAGCCAGCCATAG 915 0.353 MMRTPNNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWASIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVSNCDINNALRLQYSLLPQSLVNGVLGFNNNIQNFYDGTNIGISSQIIQPNLQNFEAPIQQFLPQECEYSQKFDEQIGNTNVDSAISSNSLPKLVSVSPQRLATVKVCDENMMINEKECCNTSSTSFETWEDFMNEDANDAYWKDFIEQQYSSQP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00171 304 CDD SANT 69 112 IPR001005 -
Trre9g00171 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre9g00171 304 CDD SANT 16 61 IPR001005 -
Trre9g00171 304 Gene3D - 11 67 - -
Trre9g00171 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre9g00171 304 FunFam Transcription factor MYB39 69 130 - -
Trre9g00171 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre9g00171 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre9g00171 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre9g00171 304 SMART sant 13 63 IPR001005 -
Trre9g00171 304 SMART sant 66 114 IPR001005 -
Trre9g00171 304 FunFam MYB-related transcription factor 13 66 - -
Trre9g00171 304 Gene3D - 69 116 - -
Trre9g00171 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre9g00171 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre9g00171 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00171 Trre-Chr9 1331488 1333467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00171 1 297 MYB Transcription Factor Family AT5G16770 48.466 7.71e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g00171 Myb_DNA-binding 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00171 K09422 - gmx:102660452 355.525