Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00163 ATGACCTTTATACCCTGCATATATTTTTCTTTTCCCCCTCATATCCAACTTGGTAAACACGCGCACGCACAAATCACAACACAGGAACAGAAAGACGCCACACACCACCACCGCCCTAAGCACCATCGACCGCCACCACCGGCCGCACCACCACAACACGTCGATCACACCATCTCACTTCTCAGATTAAGGTTCAAGATGGCTGCAATTTTTGCTTCCAGATATTCTCGTGTGGGCCGTTCTCTGCTCGGTGGATTAAACAACAGTTCCCCTGGTCTATTTACCATGTCGCATGAGATGACATGCAGCAATTATTTTTCTCAGCAACAAAGGACCTTCATACAGATGAGGACTGTTCTAAAGGTTGTGGACAATTCCGGGGCTAAAAAGGTGATGTGCATACACGCGTTGACAGGAAAGAGAGGAGCAAGATTAGGTGATATGATAAAGGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAGCGACTGTATTTGCCGTAGTTGTTCGTGCTGCAATGCCAAAGGGGAGGTGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTTGTGCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTAGCTGGCCATATTGCATAG 699 0.4707 MTFIPCIYFSFPPHIQLGKHAHAQITTQEQKDATHHHRPKHHRPPPPAAPPQHVDHTISLLRLRFKMAAIFASRYSRVGRSLLGGLNNSSPGLFTMSHEMTCSNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIHALTGKRGARLGDMIKASVKEAHPNGKVKKGATVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00163 232 SUPERFAMILY Ribosomal protein L14 114 231 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre9g00163 232 Gene3D Ribosomal protein L14 113 232 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre9g00163 232 MobiDBLite consensus disorder prediction 22 53 - -
Trre9g00163 232 Hamap 50S ribosomal protein L14 [rplN]. 113 232 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre9g00163 232 Pfam Ribosomal protein L14p/L23e 114 231 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre9g00163 232 NCBIfam 50S ribosomal protein L14 114 231 IPR005745 GO:0003735|GO:0006412|GO:0015934
Trre9g00163 232 ProSitePatterns Ribosomal protein L14 signature. 170 196 IPR019972 -
Trre9g00163 232 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 114 231 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre9g00163 232 FunFam 50S ribosomal protein HLP, mitochondrial-like 113 232 - -
Trre9g00163 232 SMART Ribosomal_L14_2 113 232 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00163 Trre-Chr9 1283755 1286665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00163 124 215 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 3.39e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00163 K02874 - gmx:100818301 275.404